Browse Element(s) Details


OsAffx.16738.1.S1_at

Description tigr:9635.m04712
TID=OsAffx.16738.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4681011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46780Os.21410.2.S1_x_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780Os.21410.1.S1_at11/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46780OsAffx.21636.1.S1_x_at2/117+27949169..27955793tryptophan/tyrosine permease family protein, putative, expressed
LOC_Os07g46790Os.9980.2.S1_x_at10/117+27958851..27966077glycoside hydrolase family 77 protein, putative, expressed
LOC_Os07g46800NANA7+27968170..27968616hypothetical protein
LOC_Os07g46810OsAffx.16738.1.S1_at11/117+27980212..27981050expressed protein
LOC_Os07g46820Os.34737.2.S1_x_at11/117+27981530..27986262RNA recognition motif family protein, expressed
LOC_Os07g46830OsAffx.22529.1.S1_s_at11/117+27989502..27990897NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840Os.27920.1.A1_at11/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840OsAffx.22529.1.S1_s_at1/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_s_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.1.S1_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_x_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.7935.2.S1_x_at4/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846OsAffx.28936.1.S1_x_at1/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.2.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.28282.2.S1_x_at4/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16738.1.S1_at--1045--9691Chr07:27980458..27980482 (25 bp)
TCAACCTCGGCAATGATCCTGACAA
LOC_Os07g46810
OsAffx.16738.1.S1_at--1012--1031Chr07:27980498..27980522 (25 bp)
AGGTCCTGATGGTGCATTCTCTGTT
LOC_Os07g46810
OsAffx.16738.1.S1_at--257--6851Chr07:27980520..27980544 (25 bp)
GTTTCCTCTGCCTATGATATGTTTT
LOC_Os07g46810
OsAffx.16738.1.S1_at--916--10031Chr07:27980603..27980627 (25 bp)
TAGAGTACGATTCTTCTTCTGGCTG
LOC_Os07g46810
OsAffx.16738.1.S1_at--479--671Chr07:27980683..27980707 (25 bp)
ATGAAGACAGCTGCGCACTTTGTAT
LOC_Os07g46810
OsAffx.16738.1.S1_at--927--4431Chr07:27980725..27980749 (25 bp)
GCCATCATCTATTTGTTACCTGCGA
LOC_Os07g46810
OsAffx.16738.1.S1_at--644--6771Chr07:27980739..27980763 (25 bp)
GTTACCTGCGAATTCTCTGGGAGAG
LOC_Os07g46810
OsAffx.16738.1.S1_at--75--3031Chr07:27980774..27980798 (25 bp)
AATGCGTGCTTGGATCAGTGTCGAC
LOC_Os07g46810
OsAffx.16738.1.S1_at--514--3491Chr07:27980852..27980876 (25 bp)
CAGGCGCTGTTTTCGGACGGGCTAT
LOC_Os07g46810
OsAffx.16738.1.S1_at--471--8151Chr07:27980879..27980903 (25 bp)
GGAAATCTTCGATGCTGTCCTCATG
LOC_Os07g46810
OsAffx.16738.1.S1_at--714--2311Chr07:27980953..27980977 (25 bp)
AAAGGTTGCGTTCCCCTGAGCAATT
LOC_Os07g46810
Target Sequence 
TCAACCTCGGCAATGATCCTGACAAAATCAGATGGAAACCAGGTCCTGATGGTGCATTCTCTGTTTCCTCTGCCTATGAT
ATGTTTTTTATGGCGAGGCAAAGCTACCCCTTCGGACAACACATTTGGCAGACCAACGCGCCATCTAGAGTACGATTCTT
CTTCTGGCTGGCTGCAAGAGGAAGGTGTCAGACAGCAGATAATCTGGCGAAGAAGGGGTGGCCACATGAAGACAGCTGCG
CACTTTGTATGCGCGAACAGGAAGACTGCCATCATCTATTTGTTACCTGCGAATTCTCTGGGAGAGTCTGGGAACTAATG
CGTGCTTGGATCAGTGTCGACTTCCCGATCCCAGGTCAGATTGATTGCAGTCTAATCGATTGGTGGTTTGAAGCCAGGCG
CTGTTTTCGGACGGGCTATAGGGAAATCTTCGATGCTGTCCTCATGTTAGTATGCTGGTTGATATGGAAGGAGCGCAATG
CTCGGATTTTCGAGCAAAGGTTGCGTTCCCCTGAGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis