Browse Element(s) Details


Os.34737.2.S1_x_at

Description gb:NM_186050.1
DB_XREF= gi:34899185
GEN=P0453E03.29
TID=Os.34737.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) CUG triplet repeat RNA-binding protein 1 (P0453E03.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) CUG triplet repeat RNA-binding protein 1 (P0453E03.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4682011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46790Os.9980.2.S1_x_at10/117+27958851..27966077glycoside hydrolase family 77 protein, putative, expressed
LOC_Os07g46800NANA7+27968170..27968616hypothetical protein
LOC_Os07g46810OsAffx.16738.1.S1_at11/117+27980212..27981050expressed protein
LOC_Os07g46820Os.34737.2.S1_x_at11/117+27981530..27986262RNA recognition motif family protein, expressed
LOC_Os07g46830OsAffx.22529.1.S1_s_at11/117+27989502..27990897NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840Os.27920.1.A1_at11/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840OsAffx.22529.1.S1_s_at1/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_s_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.1.S1_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_x_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.7935.2.S1_x_at4/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846OsAffx.28936.1.S1_x_at1/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.2.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.28282.2.S1_x_at4/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34737.2.S1_x_at--187--5451Chr07:27982539..27982563 (25 bp)
GAACCCATTGGCATTGTACAGCACT
LOC_Os07g46820
Os.34737.2.S1_x_at--337--9871Chr07:27982523..27982547 (25 bp)
TACAGCACTATGTACCCACATGTCA
LOC_Os07g46820
Os.34737.2.S1_x_at--949--10631Chr07:27982437..27982461 (25 bp)
TTCGAACCTGATTCAATCTGCTGGA
LOC_Os07g46820
Os.34737.2.S1_x_at--267--9471Chr07:27982421..27982445 (25 bp)
TCTGCTGGATACATACAACCTCCTT
LOC_Os07g46820
Os.34737.2.S1_x_at--1079--6511Chr07:27982391..27982415 (25 bp)
GATTTGTCAGGTCTTCATTACCCAG
LOC_Os07g46820
Os.34737.2.S1_x_at--855--4171Chr07:27982371..27982395 (25 bp)
CCCAGTATCATATGCAGGTGCCTTA
LOC_Os07g46820
Os.34737.2.S1_x_at--504--6471Chr07:27982340..27982364 (25 bp)
GATACACCACAGTATTTCTCTGATG
LOC_Os07g46820
Os.34737.2.S1_x_at--580--7131Chr07:27982294..27982318 (25 bp)
GTCATAGCAATCATGCCTCATCTGC
LOC_Os07g46820
Os.34737.2.S1_x_at--924--5271Chr07:27982151..27982173 (23 bp)
GAAGGACCTCCTAGGGCTAATTTAT
LOC_Os07g46820
Os.34737.2.S1_x_at--758--10251Chr07:27982127..27982151 (25 bp)
TTTGTCTATGACATCCCTCAAGAAT
LOC_Os07g46820
Os.34737.2.S1_x_at--73--6791Chr07:27981912..27981936 (25 bp)
GTTAGTTATGACACACCAGCATCAG
LOC_Os07g46820
Target Sequence 
GAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATAT
TTCCAGGAACAGATCCTAAAATTTCGAACCTGATTCAATCTGCTGGATACATACAACCTCCTTACCCTGATTTGTCAGGT
CTTCATTACCCAGTATCATATGCAGGTGCCTTAGTGGGAGATACACCACAGTATTTCTCTGATGGTAAGGTAAACATACC
AAACAGTCATAGCAATCATGCCTCATCTGCAGCAAACACAAAGATAGGGAGTAAGATTGAAGGACCTCCTAGGGCTAATT
TATTTGTCTATGACATCCCTCAAGAATACGGTGATGAAGATCTGGCAAATCTATTTCAAGAATTTGGTAGGATCTTGAGT
ACCAAGGTTTTCATTGACAGAGCTACTGGTGTCAGTAAATGTTTCGGCTTTGTTAGTTATGACACACCAGCATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34737.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis