Browse Element(s) Details


Os.7935.1.S1_at

Description gb:AK061856.1
DB_XREF= gi:32971874
TID=Os.7935.1
CNT=86
FEA=FLmRNA
TIER=FL+Stack
STK=26
UG=Os.7935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) alcohol dehydrogenase-like protein~contains ESTs D41510(S4048),AU033144(S4048) (P0453E03.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G03, full insert sequence.
FL= gb:AK061856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4685211/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46810OsAffx.16738.1.S1_at11/117+27980212..27981050expressed protein
LOC_Os07g46820Os.34737.2.S1_x_at11/117+27981530..27986262RNA recognition motif family protein, expressed
LOC_Os07g46830OsAffx.22529.1.S1_s_at11/117+27989502..27990897NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840Os.27920.1.A1_at11/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840OsAffx.22529.1.S1_s_at1/117+27994153..27995532NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_s_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.1.S1_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.28282.2.S1_x_at11/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846Os.7935.2.S1_x_at4/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846OsAffx.28936.1.S1_x_at1/117+28000893..28002718oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.1.S1_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.7935.2.S1_x_at11/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852Os.28282.2.S1_x_at4/117+28003177..28004682oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.28936.1.S1_at11/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.28936.1.S1_x_at11/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860Os.7935.2.S1_x_at1/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.31756.5.S1_x_at1/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46870OsAffx.31756.5.S1_x_at11/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.53426.1.S1_at4/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.28282.2.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.7935.2.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870OsAffx.31756.3.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46880NANA7+28023724..28029879transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7935.1.S1_at--443--531Chr07:28004330..28004354 (25 bp)
ATCGCATGAATTAATGACACACCCA
LOC_Os07g46852
Os.7935.1.S1_at--736--8951Chr07:28004344..28004368 (25 bp)
TGACACACCCAACTAATTAATCGAT
LOC_Os07g46852
Os.7935.1.S1_at--504--1811Chr07:28004350..28004374 (25 bp)
ACCCAACTAATTAATCGATCGAACA
LOC_Os07g46852
Os.7935.1.S1_at--238--6391Chr07:28004366..28004390 (25 bp)
GATCGAACACCCTTGTTCGTCGACT
LOC_Os07g46852
Os.7935.1.S1_at--952--6711Chr07:28004380..28004404 (25 bp)
GTTCGTCGACTCGTCAGAATAATAA
LOC_Os07g46852
Os.7935.1.S1_at--903--7211Chr07:28004384..28004408 (25 bp)
GTCGACTCGTCAGAATAATAAGGTT
LOC_Os07g46852
Os.7935.1.S1_at--456--351Chr07:28004401..28004425 (25 bp)
ATAAGGTTGTGGTGCATATGTACGT
LOC_Os07g46852
Os.7935.1.S1_at--1064--7491Chr07:28004409..28004433 (25 bp)
GTGGTGCATATGTACGTGCATTGCA
LOC_Os07g46852
Os.7935.1.S1_at--801--8751Chr07:28004419..28004443 (25 bp)
TGTACGTGCATTGCACTTGATAGTG
LOC_Os07g46852
Os.7935.1.S1_at--240--9031Chr07:28004442..28004466 (25 bp)
TGCAGCGGCAAGGAGTGTGTCCCTC
LOC_Os07g46852
Os.7935.1.S1_at--577--3951Chr07:28004447..28004471 (25 bp)
CGGCAAGGAGTGTGTCCCTCCAATT
LOC_Os07g46852
Target Sequence 
ATCGCATGAATTAATGACACACCCAACTAATTAATCGATCGAACACCCTTGTTCGTCGACTCGTCAGAATAATAAGGTTG
TGGTGCATATGTACGTGCATTGCACTTGATAGTGCAGCGGCAAGGAGTGTGTCCCTCCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis