Browse Element(s) Details

Os.53426.1.S1_at

Description

gb:AK072555.1
DB_XREF= gi:32982578
TID=Os.53426.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023126E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126E04, full insert sequence.
FL= gb:AK072555.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g46870	4/11	oxidoreductase, short chain dehydrogenase/reductase family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g46840	Os.27920.1.A1_at	11/11	7	+	27994153..27995532	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46840	OsAffx.22529.1.S1_s_at	1/11	7	+	27994153..27995532	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46846	Os.28282.2.S1_s_at	11/11	7	+	28000893..28002718	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846	Os.28282.1.S1_at	11/11	7	+	28000893..28002718	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846	Os.28282.2.S1_x_at	11/11	7	+	28000893..28002718	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846	Os.7935.2.S1_x_at	4/11	7	+	28000893..28002718	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46846	OsAffx.28936.1.S1_x_at	1/11	7	+	28000893..28002718	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852	Os.7935.1.S1_x_at	11/11	7	+	28003177..28004682	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852	Os.7935.1.S1_at	11/11	7	+	28003177..28004682	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852	Os.7935.2.S1_x_at	11/11	7	+	28003177..28004682	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46852	Os.28282.2.S1_x_at	4/11	7	+	28003177..28004682	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	OsAffx.28936.1.S1_at	11/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	OsAffx.28936.1.S1_x_at	11/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	Os.7935.2.S1_x_at	1/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	OsAffx.31756.5.S1_x_at	1/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46870	OsAffx.31756.5.S1_x_at	11/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	Os.53426.1.S1_at	4/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	Os.28282.2.S1_x_at	1/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	Os.7935.2.S1_x_at	1/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	OsAffx.31756.3.S1_x_at	1/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46880	NA	NA	7	+	28023724..28029879	transposon protein, putative, unclassified
LOC_Os07g46890	NA	NA	7	+	28030524..28033752	retrotransposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.3.S1_x_at	11/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.3.S1_at	11/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.1.S1_x_at	10/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.1.S1_at	5/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.5.S1_x_at	1/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46910	Os.30239.1.S1_at	11/11	7	+	28043187..28044605	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910	Os.16866.2.A1_x_at	1/11	7	+	28043187..28044605	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910	Os.28438.4.S1_x_at	1/11	7	+	28043187..28044605	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016491	molecular_function	oxidoreductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53426.1.S1_at--892--161	2	Chr07:28017560..28017584 (25 bp)	AGCTGGTGATGCAGTCCATCGGCAC	LOC_Os07g46870
Os.53426.1.S1_at--135--49	1	Chr09:13157823..13157847 (25 bp)	ATCGGCACCGTGATCCCAGGCGTCG	NONE
Os.53426.1.S1_at--487--719	2	Chr07:28017598..28017622 (25 bp)	GTCGGCGGCAGCTTGCAATCATAGG	LOC_Os07g46870
Os.53426.1.S1_at--135--341	1	Chr09:13157794..13157818 (25 bp)	CAGCTTGCAATCATAGGGCGCCGCG	NONE
Os.53426.1.S1_at--184--409	1	Chr09:13157729..13157753 (25 bp)	CGACGATTGGGCAGTAGCAGGACAA	NONE
Os.53426.1.S1_at--871--265	1	Chr09:13157456..13157480 (25 bp)	AAGCCAGCGGCGGTCAACAGCAGTA	NONE
Os.53426.1.S1_at--550--183	2	Chr07:28018023..28018047 (25 bp)	ACGCTGTACAGCCACGTAGGACGGT	LOC_Os07g46870
Os.53426.1.S1_at--123--335	1	Chr09:13157370..13157394 (25 bp)	CACGTAGGACGGTCAATCCTGTCAA	NONE
Os.53426.1.S1_at--389--191	1	Chr09:13157362..13157386 (25 bp)	ACGGTCAATCCTGTCAAATGTGCTT	NONE
Os.53426.1.S1_at--124--709	3	Chr09:13158718..13158741 (24 bp)	GTCAAATGTGCTTTGGACCGCAATG	NONE
Os.53426.1.S1_at--1064--487	1	Chr09:13157341..13157365 (25 bp)	GCTTTGGACCGCAATGATTCATTTA	NONE

Target Sequence

AGCTGGTGATGCAGTCCATCGGCACCGTGATCCCAGGCGTCGGCGGCAGCTTGCAATCATAGGGCGCCGCGCAGGACACG
GACGCCTCCACCACCCTTGCCTTCGGCGAGCCGACGATTGGGCAGTAGCAGGACAAGGGGGTGACGATCTCTGGTGTGGT
GAAGCGGCGGAAGGAGGACGTGGCGCAGGGCGTGCCGACGGTGGCGGCGGCGCCGGGCGACATGATGGCGAAGGTCCGGG
AGGCGTCCGCGAGTGCTGACCAAGGCGTGGGAGGCCGTCTTGTCGCTCACTGGCGAGAACCGCGTCTCCGGAGGGAAAGG
GAAAGGGGAGAGGGAAGGTGGTGAGGAGGAGGAGGGAGAGAGTAGAGCCGATGGCGAGCAGGTGAAGCCAGCGGCGGTCA
ACAGCAGTAGTGGAGGGTTGGATCAGGTGTGTAGGGGCTTAAGTGCAAATATGGGGCCACGCTGTACAGCCACGTAGGAC
GGTCAATCCTGTCAAATGTGCTTTGGACCGCAATGATTCATTTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis