Browse Element(s) Details


OsAffx.31756.3.S1_x_at

Description tigr:9635.m04721
TID=OsAffx.31756.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4690011/11transposon protein, putative, unclassified
LOC_Os07g468701/11oxidoreductase, short chain dehydrogenase/reductase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46860OsAffx.28936.1.S1_at11/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.28936.1.S1_x_at11/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860Os.7935.2.S1_x_at1/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860OsAffx.31756.5.S1_x_at1/117+28012126..28013280oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46870OsAffx.31756.5.S1_x_at11/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.53426.1.S1_at4/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.28282.2.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.7935.2.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870OsAffx.31756.3.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46880NANA7+28023724..28029879transposon protein, putative, unclassified
LOC_Os07g46890NANA7+28030524..28033752retrotransposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_x_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_x_at10/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_at5/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.5.S1_x_at1/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46910Os.30239.1.S1_at11/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.16866.2.A1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.28438.4.S1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_x_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.44598.1.S1_x_at1/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46930Os.44598.1.S1_x_at11/117+28052133..28054681oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46940Os.16866.2.A1_x_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46940OsAffx.22529.1.S1_s_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46950Os.32357.1.S1_x_at11/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.32357.1.S1_at8/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.10002.1.S1_at7/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46960NANA7+28064437..28065364hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31756.3.S1_x_at--794--3111Chr07:28040351..28040375 (25 bp)
AATTTCAAGCGTATTGCGGAGGCCA
LOC_Os07g46900
OsAffx.31756.3.S1_x_at--417--1571Chr07:28040358..28040382 (25 bp)
AGCGTATTGCGGAGGCCAACAACAA
LOC_Os07g46900
OsAffx.31756.3.S1_x_at--450--5511Chr07:28040385..28040409 (25 bp)
GAAAACGTAAGAGAGGTCGCCCAAG
LOC_Os07g46900
OsAffx.31756.3.S1_x_at--606--5551Chr07:28040440..28040464 (25 bp)
GAAAGCTGTGAGAAGGAACCTGATT
LOC_Os07g46900
OsAffx.31756.3.S1_x_at--917--5431Chr07:28040455..28040479 (25 bp)
GAACCTGATTGACGAATGGGCTGAA
LOC_Os07g46900
OsAffx.31756.3.S1_x_at--826--11Chr07:28041738..28041762 (25 bp)
ATTGGGCAAAAATCGACTTCTCCTG
LOC_Os07g46900
OsAffx.31756.3.S1_x_at--687--3031Chr07:28041748..28041772 (25 bp)
AATCGACTTCTCCTGCAAATTTAGT
LOC_Os07g46900
OsAffx.31756.3.S1_x_at--395--3651Chr07:28041754..28041778 (25 bp)
CTTCTCCTGCAAATTTAGTCGTTAG
LOC_Os07g46900
OsAffx.31756.3.S1_x_at--1105--151Chr07:28041766..28041790 (25 bp)
ATTTAGTCGTTAGTGGCTTCTTCTC
LOC_Os07g46900
OsAffx.31756.3.S1_x_at--49--4091Chr07:28041800..28041824 (25 bp)
CGACTCCCAGAGGTTGGCCGGCAAG
LOC_Os07g46900
OsAffx.31756.3.S1_x_at--939--8412Chr07:28041869..28041893 (25 bp)
GGCCACGGAGTTCATCAAGAACGGC
LOC_Os07g46900
Target Sequence 
AATTTCAAGCGTATTGCGGAGGCCAACAACAAGGGAAAACGTAAGAGAGGTCGCCCAAGAGGAAGTGGCGTTGGAGGTGG
TCGTGGACGGAAAGCTGTGAGAAGGAACCTGATTGACGAATGGGCTGAAGGGCCTGTGGGAGGGGAGTGTAGCATGAGAA
GCGAGGAGGGTTGGTTGGGGGTAGGGGGTGGGGTGGGGGTGGGGGTGGGGGGTGGTGTAATTGGGCAAAAATCGACTTCT
CCTGCAAATTTAGTCGTTAGTGGCTTCTTCTCCGCGGCCTCCGACTCCCAGAGGTTGGCCGGCAAGGTGGCCGTCATCAC
CGGCGGCGCCAGCGGCATCGGCAAGGGGACGGCCACGGAGTTCATCAAGAACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31756.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis