Browse Element(s) Details


Os.15281.1.S1_x_at

Description gb:BM037822
DB_XREF= gi:16753443
DB_XREF=S110e08
CLONE=S110e08
TID=Os.15281.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) alcohol dehydrogenase-like protein (OJ1343_D04.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4692011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46880NANA7+28023724..28029879transposon protein, putative, unclassified
LOC_Os07g46890NANA7+28030524..28033752retrotransposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_x_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_x_at10/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_at5/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.5.S1_x_at1/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46910Os.30239.1.S1_at11/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.16866.2.A1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.28438.4.S1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_x_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.44598.1.S1_x_at1/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46930Os.44598.1.S1_x_at11/117+28052133..28054681oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46940Os.16866.2.A1_x_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46940OsAffx.22529.1.S1_s_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46950Os.32357.1.S1_x_at11/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.32357.1.S1_at8/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.10002.1.S1_at7/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46960NANA7+28064437..28065364hypothetical protein
LOC_Os07g46970NANA7+28067733..28069627NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980Os.16866.2.A1_x_at11/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980OsAffx.20394.1.S1_s_at1/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980Os.32357.1.S1_x_at1/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46990Os.4169.1.S1_at11/117+28073855..28075969Superoxide dismutase 2, putative, expressed
LOC_Os07g47000Os.45962.1.S1_a_at2/117+28076380..28078098hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15281.1.S1_x_at--257--7551Chr07:28051078..28051102 (25 bp)
GTGGCGGGCGTGATCGGCAGCGATG
LOC_Os07g46920
Os.15281.1.S1_x_at--201--4031Chr07:28051112..28051136 (25 bp)
CGTACAGCGTCTCCAAGGCGGCAGC
LOC_Os07g46920
Os.15281.1.S1_x_at--122--2951Chr07:28051126..28051150 (25 bp)
AAGGCGGCAGCCATCGGCGTGGTGA
LOC_Os07g46920
Os.15281.1.S1_x_at--228--2111Chr07:28051298..28051322 (25 bp)
ACATGAACGAGCTGGAGGGCGCAAA
LOC_Os07g46920
Os.15281.1.S1_x_at--557--2671Chr07:28051429..28051453 (25 bp)
AAGCGCCTCAACTTCGCGCATGCTT
LOC_Os07g46920
Os.15281.1.S1_x_at--109--4591Chr07:28051444..28051468 (25 bp)
GCGCATGCTTGAGTTCAGAAAATCC
LOC_Os07g46920
Os.15281.1.S1_x_at--1018--5511Chr07:28051461..28051485 (25 bp)
GAAAATCCGAAAATTTGACTTCCAT
LOC_Os07g46920
Os.15281.1.S1_x_at--334--10251Chr07:28051474..28051498 (25 bp)
TTTGACTTCCATGTGGACTTTGTTT
LOC_Os07g46920
Os.15281.1.S1_x_at--295--3512Chr07:28051483..28051507 (25 bp)
CATGTGGACTTTGTTTTATTGGAAT
LOC_Os07g46920
Os.15281.1.S1_x_at--900--6071Chr07:28051517..28051541 (25 bp)
GAGTTTGTGTATTGATTACCAGTTT
LOC_Os07g46920
Os.15281.1.S1_x_at--184--6532Chr07:28054756..28054780 (25 bp)
GATTACCAGTTTGTTGTTTAGATTT
NONE
Target Sequence 
GTGGCGGGCGTGATCGGCAGCGATGTCCCCCACGCGTACAGCGTCTCCAAGGCGGCAGCCATCGGCGTGGTGAGGTCCGC
CGCCGGCGAGCTNGGCGCNCCACGGCGTNCGGCTGANCGCCATCTCGCCGCACGGCATCNGCGACNCCNCTGNCGATGCN
GCGGGTTCGNCGACGTNCTGGCGTGGNCGGACGNCCGAGAGATTGAAGCGGGTCATCGAGGAGGACATGAACGAGCTGGA
GGGCGCAAAGCTGGAGGCGGAGGACATCGCGAGGNCGNCGGTGTACCTCGCCTCCGACGAGGCCAAGTACATCACTGGGC
ATAACCTCGTCGTCGATGGCGGGTTCACCGTCGGCAAGCGCCTCAACTTCGCGCATGCTTGAGTTCAGAAAATCCGAAAA
TTTGACTTCCATGTGGACTTTGTTTTATTGGAATAATAATTCAGAGTTTGTGTATTGATTACCAGTTTGTTGTTTAGATT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15281.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis