Browse Element(s) Details


OsAffx.20394.1.S1_s_at

Description gb:NM_196263.1
DB_XREF= gi:37533885
TID=OsAffx.20394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094J09.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g248709/11hypothetical protein
LOC_Os07g469801/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24820OsAffx.20396.1.S1_at1/1110+12437139..12438423transposon protein, putative, Mutator sub-class
LOC_Os10g24830NANA10+12438770..12440255hypothetical protein
LOC_Os10g24840OsAffx.20396.2.S1_s_at11/1110+12440600..12441173hypothetical protein
LOC_Os10g24850OsAffx.17811.1.S1_x_at2/1110+12452943..12453317hypothetical protein
LOC_Os10g24850OsAffx.20395.1.S1_at1/1110+12452943..12453317hypothetical protein
LOC_Os10g24860OsAffx.18385.1.S1_at11/1110+12454207..12454743hypothetical protein
LOC_Os10g24870OsAffx.20394.1.S1_at11/1110+12455141..12456691hypothetical protein
LOC_Os10g24870OsAffx.20394.1.S1_s_at9/1110+12455141..12456691hypothetical protein
LOC_Os10g24870OsAffx.20394.3.S1_at2/1110+12455141..12456691hypothetical protein
LOC_Os10g24880NANA10+12458760..12459299hypothetical protein
LOC_Os10g24890OsAffx.20394.3.S1_at11/1110+12462669..12463718hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20394.1.S1_s_at--863--6131Chr10:12456214..12456288 (25 bp)
GAGGGAGAAGGCAAGATCATATAGA
LOC_Os10g24870
OsAffx.20394.1.S1_s_at--1107--1271Chr10:12456201..12456225 (25 bp)
AGATCATATAGAAACGAGGCTCATA
LOC_Os10g24870
OsAffx.20394.1.S1_s_at--756--5531Chr10:12456191..12456215 (25 bp)
GAAACGAGGCTCATATGGAGGGAAA
LOC_Os10g24870
OsAffx.20394.1.S1_s_at--568--7231NONE
GTCGCAGAGCAGTGCCAGGCCAGTC
NONE
OsAffx.20394.1.S1_s_at--100--5051NONE
GCAGAGCAGTGCCAGGCCAGTCCAC
NONE
OsAffx.20394.1.S1_s_at--1135--39910Chr10:16145089..16145112 (24 bp)
CGTGCCAAGGCATCGGCCCAGGCAT
NONE
OsAffx.20394.1.S1_s_at--696--472Chr10:12455265..12455289 (25 bp)
ATCGGCCCAGGCATGACCCAACTAT
LOC_Os10g24870
OsAffx.20394.1.S1_s_at--269--933Chr07:28071758..28072019 (25 bp)
AGGCATGACCCAACTATCGGGCCGG
LOC_Os07g46980
OsAffx.20394.1.S1_s_at--1059--632Chr10:12455253..12455277 (25 bp)
ATGACCCAACTATCGGGCCGGGCCA
LOC_Os10g24870
OsAffx.20394.1.S1_s_at--129--1731Chr10:12455215..12455239 (25 bp)
ACCAGTCGTGCCATGCCGTGCTTGA
LOC_Os10g24870
OsAffx.20394.1.S1_s_at--917--9411Chr10:12455210..12455234 (25 bp)
TCGTGCCATGCCGTGCTTGAGCCGG
LOC_Os10g24870
Target Sequence 
GAGGGAGAAGGCAAGATCATATAGAAACGAGGCTCATATGGAGGGAAAATGGAAGAATCAGCAAAGAAAGAAAATCAAAT
GTGGAGAGCCTCATATGGAGGGCGATTTTCTGCCAAGCGTGACCATCATCATCATGGATGGTGGTCGCAGAGCAGTGCCA
GGCCAGTCCACCGTGCCAAGGCATCGGCCCAGGCATGACCCAACTATCGGGCCGGGCCAGCACAGGCCCGACACCAGTCG
TGCCATGCCGTGCTTGAGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20394.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis