Browse Element(s) Details


OsAffx.20396.2.S1_s_at

Description gb:NM_196261.1
DB_XREF= gi:37533881
TID=OsAffx.20396.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094J09.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2484011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24790Os.35344.3.S1_x_at11/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790Os.35344.18.S1_x_at10/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790OsAffx.22940.5.S1_x_at3/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24800OsAffx.30522.1.S1_at9/1110+12422526..12423202hypothetical protein
LOC_Os10g24810Os.5970.1.S1_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24810Os.46126.1.S1_x_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24810Os.46126.1.S1_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24820OsAffx.20396.1.S1_at1/1110+12437139..12438423transposon protein, putative, Mutator sub-class
LOC_Os10g24830NANA10+12438770..12440255hypothetical protein
LOC_Os10g24840OsAffx.20396.2.S1_s_at11/1110+12440600..12441173hypothetical protein
LOC_Os10g24850OsAffx.17811.1.S1_x_at2/1110+12452943..12453317hypothetical protein
LOC_Os10g24850OsAffx.20395.1.S1_at1/1110+12452943..12453317hypothetical protein
LOC_Os10g24860OsAffx.18385.1.S1_at11/1110+12454207..12454743hypothetical protein
LOC_Os10g24870OsAffx.20394.1.S1_at11/1110+12455141..12456691hypothetical protein
LOC_Os10g24870OsAffx.20394.1.S1_s_at9/1110+12455141..12456691hypothetical protein
LOC_Os10g24870OsAffx.20394.3.S1_at2/1110+12455141..12456691hypothetical protein
LOC_Os10g24880NANA10+12458760..12459299hypothetical protein
LOC_Os10g24890OsAffx.20394.3.S1_at11/1110+12462669..12463718hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20396.2.S1_s_at--604--7611Chr10:12441112..12441136 (25 bp)
GGGAACGTCGCATTCACCTCTGGGA
LOC_Os10g24840
OsAffx.20396.2.S1_s_at--410--4951Chr10:12441103..12441127 (25 bp)
GCATTCACCTCTGGGAGCGCCTGAT
LOC_Os10g24840
OsAffx.20396.2.S1_s_at--215--9471Chr10:12441094..12441118 (25 bp)
TCTGGGAGCGCCTGATTCGTCGTGC
LOC_Os10g24840
OsAffx.20396.2.S1_s_at--62--471Chr10:12441062..12441086 (25 bp)
ATCTCCGATCACCATGGTCCTGCTA
LOC_Os10g24840
OsAffx.20396.2.S1_s_at--221--1731Chr10:12441052..12441076 (25 bp)
ACCATGGTCCTGCTATGCCGTGTGC
LOC_Os10g24840
OsAffx.20396.2.S1_s_at--1145--9071Chr10:12441042..12441066 (25 bp)
TGCTATGCCGTGTGCCGCTCTGTCC
LOC_Os10g24840
OsAffx.20396.2.S1_s_at--148--9471Chr10:12441024..12441048 (25 bp)
TCTGTCCTCCCGCATCGAGGACGAG
LOC_Os10g24840
OsAffx.20396.2.S1_s_at--968--511Chr10:12441011..12441035 (25 bp)
ATCGAGGACGAGCTTCGCCGGATCT
LOC_Os10g24840
OsAffx.20396.2.S1_s_at--997--4911Chr10:12441000..12441024 (25 bp)
GCTTCGCCGGATCTCGTTGTACCTA
LOC_Os10g24840
OsAffx.20396.2.S1_s_at--1104--10631Chr10:12440967..12440991 (25 bp)
TTCCCAGCTAGTTGCTCGGCTTTCT
LOC_Os10g24840
OsAffx.20396.2.S1_s_at--913--3391Chr10:12440963..12440987 (25 bp)
CAGCTAGTTGCTCGGCTTTCTAGCA
LOC_Os10g24840
Target Sequence 
GGGAACGTCGCATTCACCTCTGGGAGCGCCTGATTCGTCGTGCCCTTGCCATCTCCGATCACCATGGTCCTGCTATGCCG
TGTGCCGCTCTGTCCTCCCGCATCGAGGACGAGCTTCGCCGGATCTCGTTGTACCTACCGCCGCCTTCCCAGCTAGTTGC
TCGGCTTTCTAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20396.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis