Browse Element(s) Details


OsAffx.17811.1.S1_x_at

Description tigr:9637.m01798
TID=OsAffx.17811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2097011/11Leucine Rich Repeat family protein
LOC_Os10g248502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20930Os.7838.1.S1_at10/119+12599864..12601388expressed protein
LOC_Os09g20940NANA9+12605827..12606381hypothetical protein
LOC_Os09g20950Os.45902.1.A1_x_at1/119+12614901..12617086Zinc knuckle family protein
LOC_Os09g20950Os.51841.1.S1_x_at1/119+12614901..12617086Zinc knuckle family protein
LOC_Os09g20960NANA9+12624093..12624368hypothetical protein
LOC_Os09g20970OsAffx.17811.1.S1_x_at11/119+12626179..12628653Leucine Rich Repeat family protein
LOC_Os09g20980OsAffx.29952.1.S1_s_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20980Os.57557.1.S1_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20990Os.52425.1.S1_x_at11/119+12643733..12649073expressed protein
LOC_Os09g20990OsAffx.29953.1.S1_at11/119+12643733..12649073expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17811.1.S1_x_at--1143--8391Chr09:12628141..12628165 (25 bp)
GGCGCGAACGCGAACTTGTCGTTCT
LOC_Os09g20970
OsAffx.17811.1.S1_x_at--935--9392Chr10:12453012..12453036 (25 bp)
TCGTTCTCATCCTCCTACGAGGAGG
LOC_Os10g24850
OsAffx.17811.1.S1_x_at--49--852Chr10:12453114..12453138 (25 bp)
ATGGAGCCCTGCATCAGCGAGTACG
LOC_Os10g24850
OsAffx.17811.1.S1_x_at--127--9071Chr09:12628258..12628282 (25 bp)
TGCATCAGCGAGTACGGCGTCACCG
LOC_Os09g20970
OsAffx.17811.1.S1_x_at--653--4232Chr10:12453316..12453337 (22 bp)
CCGAGGTGTTCGACCGCGCGATGCT
NONE
OsAffx.17811.1.S1_x_at--584--5631Chr09:12628489..12628513 (25 bp)
GACACCGTCGCCAGCGAGCAGCGGA
LOC_Os09g20970
OsAffx.17811.1.S1_x_at--288--4471Chr09:12628520..12628544 (25 bp)
GCCTGCTGCAGGTCGCCATGAGATG
LOC_Os09g20970
OsAffx.17811.1.S1_x_at--313--4431Chr09:12628534..12628558 (25 bp)
GCCATGAGATGCATCGACGACGCCT
LOC_Os09g20970
OsAffx.17811.1.S1_x_at--867--4351Chr09:12628577..12628601 (25 bp)
CCACCATGAGGGAGGTCGCTGGCAT
LOC_Os09g20970
OsAffx.17811.1.S1_x_at--900--1031Chr09:12628589..12628613 (25 bp)
AGGTCGCTGGCATGGTGAACGCCAT
LOC_Os09g20970
OsAffx.17811.1.S1_x_at--770--3491Chr09:12628599..12628623 (25 bp)
CATGGTGAACGCCATCCGCGAGGAA
LOC_Os09g20970
Target Sequence 
GGCGCGAACGCGAACTTGTCGTTCTCATCCTCCTACGAGGAGGACGAGGCCGGCGGCGCCATCGCTCACGGCAACCTCAA
GGCCTCCAACATCCTCTTCACGGCCACCATGGAGCCCTGCATCAGCGAGTACGGCGTCACCGCGCCGCCGCCGCCGTCGT
CGGCGCCAGCGGCGGCGCTTCGCGCCGACGTGCGCGCGTACGGCGTGCTGCTGCTGGAGCTGCTCACGGGGAAGGCCACG
GCAGCGGACGGCGCCGAGCTGTCGCGGTGGGTGACGGCCGTCATCCGGGAGGAGTGGACAGCCGAGGTGTTCGACCGCGC
GATGCTCTCCTCCGCCGGCGCCGGCGGCGACACCGTCGCCAGCGAGCAGCGGATGGTGCGCCTGCTGCAGGTCGCCATGA
GATGCATCGACGACGCCTCCTCGCCGTCGCCGCCGCCCACCATGAGGGAGGTCGCTGGCATGGTGAACGCCATCCGCGAG
GAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17811.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis