Browse Element(s) Details


OsAffx.29953.1.S1_at

Description tigr:9637.m01800
TID=OsAffx.29953.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=trehalose-phosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2099011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20960NANA9+12624093..12624368hypothetical protein
LOC_Os09g20970OsAffx.17811.1.S1_x_at11/119+12626179..12628653Leucine Rich Repeat family protein
LOC_Os09g20980OsAffx.29952.1.S1_s_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20980Os.57557.1.S1_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20990Os.52425.1.S1_x_at11/119+12643733..12649073expressed protein
LOC_Os09g20990OsAffx.29953.1.S1_at11/119+12643733..12649073expressed protein
LOC_Os09g21000Os.53102.1.S1_s_at11/119+12661823..12666522Potassium transporter 12, putative, expressed
LOC_Os09g21010OsAffx.17812.1.S1_at5/119+12670658..12671023hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29953.1.S1_at--787--2691Chr09:12644404..12644428 (25 bp)
AAGCTCCTCAGCTCAAGATTGTGAA
LOC_Os09g20990
OsAffx.29953.1.S1_at--562--5291Chr09:12644382..12644406 (25 bp)
GAATGGAAGAACATCGCCGAGCCTA
LOC_Os09g20990
OsAffx.29953.1.S1_at--658--9331Chr09:12644369..12644393 (25 bp)
TCGCCGAGCCTATCATGGAAGTATA
LOC_Os09g20990
OsAffx.29953.1.S1_at--616--5531Chr09:12644340..12644364 (25 bp)
GAAACAACCGATGGGTCTGCCATAG
LOC_Os09g20990
OsAffx.29953.1.S1_at--510--9391Chr09:12644181..12644201 (21 bp)
TCGTAGAAGTTAAGCCCCAGGGTGT
LOC_Os09g20990
OsAffx.29953.1.S1_at--767--3891Chr09:12644022..12644046 (25 bp)
CTGTGGACACAGTCATTCGGACGGT
LOC_Os09g20990
OsAffx.29953.1.S1_at--437--2411Chr09:12643986..12644010 (25 bp)
AAAACGCACCGGATTTTCTGATGTG
LOC_Os09g20990
OsAffx.29953.1.S1_at--286--3011Chr09:12643918..12643942 (25 bp)
AATGAAGCCGTCTCACGTTCTGTGT
LOC_Os09g20990
OsAffx.29953.1.S1_at--1059--8671Chr09:12643898..12643922 (25 bp)
TGTGTTTCCTACTGCTCCAGATGTC
LOC_Os09g20990
OsAffx.29953.1.S1_at--1120--10271Chr09:12643873..12643897 (25 bp)
TTTGCCTGCTCTGTTGGCCAGAAGG
LOC_Os09g20990
OsAffx.29953.1.S1_at--804--6551Chr09:12643803..12643827 (25 bp)
GATTACTCAAGGGTGTAACCGCCAT
LOC_Os09g20990
Target Sequence 
AAGCTCCTCAGCTCAAGATTGTGAATGGAAGAACATCGCCGAGCCTATCATGGAAGTATACAAGGAAACAACCGATGGGT
CTGCCATAGAGACAAAGGAGAGTGGGCTAGTTTGGCATTATCAGGATGCAGATCATGACTTCGGTTCATGCCAGGCGAAG
GAGCTAGTGAGTCATCTTGAGAGGGTGCTGGCAAATGAACCTGTTGTGGTTAAACGTGGTCATCAAATCGTAGAAGTTAA
GCCCCAGGGTGTTAGCAAGGGGATTGCTGTGGACACAGTCATTCGGACGGTAATCAACAACGAAAACGCACCGGATTTTC
TGATGTGCATTGGTAACGATCGATCGGACGAGGACATGTTTGAGAGCATCAATGAAGCCGTCTCACGTTCTGTGTTTCCT
ACTGCTCCAGATGTCTTTGCCTGCTCTGTTGGCCAGAAGGCTAGCAAAGCGAAGTACTATGTGGATGGGTGCAGTGAGGT
GATCAGATTACTCAAGGGTGTAACCGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis