Browse Element(s) Details


OsAffx.29952.1.S1_s_at

Description tigr:9637.m01799
TID=OsAffx.29952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2098011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20950Os.45902.1.A1_x_at1/119+12614901..12617086Zinc knuckle family protein
LOC_Os09g20950Os.51841.1.S1_x_at1/119+12614901..12617086Zinc knuckle family protein
LOC_Os09g20960NANA9+12624093..12624368hypothetical protein
LOC_Os09g20970OsAffx.17811.1.S1_x_at11/119+12626179..12628653Leucine Rich Repeat family protein
LOC_Os09g20980OsAffx.29952.1.S1_s_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20980Os.57557.1.S1_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20990Os.52425.1.S1_x_at11/119+12643733..12649073expressed protein
LOC_Os09g20990OsAffx.29953.1.S1_at11/119+12643733..12649073expressed protein
LOC_Os09g21000Os.53102.1.S1_s_at11/119+12661823..12666522Potassium transporter 12, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29952.1.S1_s_at--468--931Chr09:12637562..12637586 (25 bp)
AGGACCAGAAGCTGGACCACCACCA
LOC_Os09g20980
OsAffx.29952.1.S1_s_at--355--5771Chr09:12637603..12637627 (25 bp)
GACGAGCCCGCGACCAGCTTCGTGC
LOC_Os09g20980
OsAffx.29952.1.S1_s_at--626--1431Chr09:12637652..12637676 (25 bp)
AGAACACGCAGCGCAGCGACGGCGA
LOC_Os09g20980
OsAffx.29952.1.S1_s_at--556--5791Chr09:12637759..12637783 (25 bp)
GACGACAACCTGCTGATCTCCGTGC
LOC_Os09g20980
OsAffx.29952.1.S1_s_at--624--2631Chr09:12637765..12637789 (25 bp)
AACCTGCTGATCTCCGTGCACTGGC
LOC_Os09g20980
OsAffx.29952.1.S1_s_at--302--1931Chr09:12637784..12637808 (25 bp)
ACTGGCGCCCCGGCGATGGCATTAG
LOC_Os09g20980
OsAffx.29952.1.S1_s_at--1071--8372Chr09:12637795..12637819 (25 bp)
GGCGATGGCATTAGCGCCGCCACCG
LOC_Os09g20980
OsAffx.29952.1.S1_s_at--391--1951Chr09:12637849..12637873 (25 bp)
ACGGCGCGCACTGGCATTAAGCAGG
LOC_Os09g20980
OsAffx.29952.1.S1_s_at--381--3331Chr09:12637857..12637881 (25 bp)
CACTGGCATTAAGCAGGGCGGCGGC
LOC_Os09g20980
OsAffx.29952.1.S1_s_at--30--7431Chr09:12637900..12637924 (25 bp)
GTGTTCGGCCGAGGCGACAGCTTCT
LOC_Os09g20980
OsAffx.29952.1.S1_s_at--960--6211Chr09:12637910..12637934 (25 bp)
GAGGCGACAGCTTCTCGATGTCCAA
LOC_Os09g20980
Target Sequence 
AGGACCAGAAGCTGGACCACCACCACCCGCCGCCGCCGTCCGACGAGCCCGCGACCAGCTTCGTGCTCTCCGTCAGGCTC
GGCCGGTTCAAGAACACGCAGCGCAGCGACGGCGACGCCGACGCGAGCGGCGGCGGCAGCCGCTGCATCGACGCGCGGCG
GTGCTACTCCATGGGCTCGTACCAGTACGTGCTCGCCGACGACAACCTGCTGATCTCCGTGCACTGGCGCCCCGGCGATG
GCATTAGCGCCGCCACCGCCGCCGCCGCCGCGGGCGCCAATGTCGCCACGGCGCGCACTGGCATTAAGCAGGGCGGCGGC
GGCGGAGGCGGCAAGAAGGTGTTCGGCCGAGGCGACAGCTTCTCGATGTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29952.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis