Browse Element(s) Details


Os.57557.1.S1_at

Description gb:AB045121.1
DB_XREF= gi:8698834
GEN=RRF1
TID=Os.57557.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57557 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) RRF1 mRNA for RING finger 1, complete cds.
PROD=RING finger 1
FL= gb:AB045121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2098011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20950Os.45902.1.A1_x_at1/119+12614901..12617086Zinc knuckle family protein
LOC_Os09g20950Os.51841.1.S1_x_at1/119+12614901..12617086Zinc knuckle family protein
LOC_Os09g20960NANA9+12624093..12624368hypothetical protein
LOC_Os09g20970OsAffx.17811.1.S1_x_at11/119+12626179..12628653Leucine Rich Repeat family protein
LOC_Os09g20980OsAffx.29952.1.S1_s_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20980Os.57557.1.S1_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20990Os.52425.1.S1_x_at11/119+12643733..12649073expressed protein
LOC_Os09g20990OsAffx.29953.1.S1_at11/119+12643733..12649073expressed protein
LOC_Os09g21000Os.53102.1.S1_s_at11/119+12661823..12666522Potassium transporter 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57557.1.S1_at--755--5551Chr09:12638056..12638080 (25 bp)
GAAAGCGACACCTGATAGATACAGC
LOC_Os09g20980
Os.57557.1.S1_at--619--5631Chr09:12638062..12638086 (25 bp)
GACACCTGATAGATACAGCTACCAA
LOC_Os09g20980
Os.57557.1.S1_at--383--10051Chr09:12638071..12638095 (25 bp)
TAGATACAGCTACCAACACACACAC
LOC_Os09g20980
Os.57557.1.S1_at--765--2331Chr09:12638122..12638146 (25 bp)
AAAGATGTATGCTTTCTTGTGCCTT
LOC_Os09g20980
Os.57557.1.S1_at--460--752Chr09:12638126..12638150 (25 bp)
ATGTATGCTTTCTTGTGCCTTTTGT
LOC_Os09g20980
Os.57557.1.S1_at--674--631Chr09:12638130..12638154 (25 bp)
ATGCTTTCTTGTGCCTTTTGTTAGT
LOC_Os09g20980
Os.57557.1.S1_at--869--3591Chr09:12638137..12638161 (25 bp)
CTTGTGCCTTTTGTTAGTGGTTAGC
LOC_Os09g20980
Os.57557.1.S1_at--932--7271Chr09:12638140..12638164 (25 bp)
GTGCCTTTTGTTAGTGGTTAGCAAT
LOC_Os09g20980
Os.57557.1.S1_at--926--7491Chr09:12638153..12638177 (25 bp)
GTGGTTAGCAATAAGCATTTCTTGA
LOC_Os09g20980
Os.57557.1.S1_at--325--3631Chr09:12638173..12638197 (25 bp)
CTTGATAATAGAGTTTTGCTGATAA
LOC_Os09g20980
Os.57557.1.S1_at--433--10491Chr09:12638202..12638226 (25 bp)
TTAATCAAATCACCTATGTATAATC
LOC_Os09g20980
Target Sequence 
GAAAGCGACACCTGATAGATACAGCTACCAACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACAAAGATGTATGCTTTCTTGTGCCTTTTGTTAGTGGTTAGCAATAAGCATTTCTTGATAATAGAGTTTTGC
TGATAATTAATTAATCAAATCACCTATGTATAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis