Browse Element(s) Details


OsAffx.17812.1.S1_at

Description tigr:9637.m01802
TID=OsAffx.17812.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g210105/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20990Os.52425.1.S1_x_at11/119+12643733..12649073expressed protein
LOC_Os09g20990OsAffx.29953.1.S1_at11/119+12643733..12649073expressed protein
LOC_Os09g21000Os.53102.1.S1_s_at11/119+12661823..12666522Potassium transporter 12, putative, expressed
LOC_Os09g21010OsAffx.17812.1.S1_at5/119+12670658..12671023hypothetical protein
LOC_Os09g21020Os.31662.1.S2_at9/119+12676273..12681660retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21020OsAffx.21754.1.S1_x_at1/119+12676273..12681660retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21030NANA9+12683680..12684069hypothetical protein
LOC_Os09g21040OsAffx.24701.1.S1_at5/119+12684745..12685682expressed protein
LOC_Os09g21040OsAffx.13010.1.S1_x_at4/119+12684745..12685682expressed protein
LOC_Os09g21050OsAffx.17814.1.S1_at11/119+12692578..12693000hypothetical protein
LOC_Os09g21060OsAffx.29954.1.S1_at11/119+12695927..12696302expressed protein
LOC_Os09g21060OsAffx.29954.1.S1_s_at11/119+12695927..12696302expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17812.1.S1_at--798--10691Chr09:12669231..12669255 (25 bp)
TTGCCAACATTGCCCACATGCCATT
NONE
OsAffx.17812.1.S1_at--1060--7672Chr09:12670847..12670871 (25 bp)
GGGTTATCTTACCTCGAGCCCATGC
LOC_Os09g21010
OsAffx.17812.1.S1_at--786--5872Chr09:12670862..12670886 (25 bp)
GAGCCCATGCACTGGATTGCCATTG
LOC_Os09g21010
OsAffx.17812.1.S1_at--603--8573Chr09:12670874..12670898 (25 bp)
TGGATTGCCATTGCCACCTTTGGAT
LOC_Os09g21010
OsAffx.17812.1.S1_at--270--71Chr09:12669320..12669344 (25 bp)
ATTGCCACCTTTGGATCCAAGGACA
NONE
OsAffx.17812.1.S1_at--347--8152Chr09:12669340..12669364 (25 bp)
GGACAAGCCACTGGATTTGAAGCTT
NONE
OsAffx.17812.1.S1_at--374--2711Chr09:12669359..12669383 (25 bp)
AAGCTTCGGGTGGAGAGTTCGTCCA
NONE
OsAffx.17812.1.S1_at--183--1353Chr09:12670935..12670959 (25 bp)
AGAGTTCGTCCATCGCTGGTGTCGA
LOC_Os09g21010
OsAffx.17812.1.S1_at--963--3891Chr09:12669387..12669411 (25 bp)
CTGGTGTCGAGGATGCATGCGTTCC
NONE
OsAffx.17812.1.S1_at--865--991Chr09:12669396..12669420 (25 bp)
AGGATGCATGCGTTCCTCCTGAAGA
NONE
OsAffx.17812.1.S1_at--446--11Chr09:12669403..12669427 (25 bp)
ATGCGTTCCTCCTGAAGACTACCTT
NONE
Target Sequence 
TTGCCAACATTGCCCACATGCCATTCTGCCTCCCTGTCGTCCCTCTGGAGGCGGGGTTATCTTACCTCGAGCCCATGCAC
TGGATTGCCATTGCCACCTTTGGATCCAAGGACAAGCCACTGGATTTGAAGCTTCGGGTGGAGAGTTCGTCCATCGCTGG
TGTCGAGGATGCATGCGTTCCTCCTGAAGACTACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis