Browse Element(s) Details


Os.31662.1.S2_at

Description gb:AK106957.1
DB_XREF= gi:32992166
TID=Os.31662.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0491F11.26 (P0491F11.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E10, full insert sequence.
FL= gb:AK071609.1 gb:AK106957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g210209/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21000Os.53102.1.S1_s_at11/119+12661823..12666522Potassium transporter 12, putative, expressed
LOC_Os09g21010OsAffx.17812.1.S1_at5/119+12670658..12671023hypothetical protein
LOC_Os09g21020Os.31662.1.S2_at9/119+12676273..12681660retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21020OsAffx.21754.1.S1_x_at1/119+12676273..12681660retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g21030NANA9+12683680..12684069hypothetical protein
LOC_Os09g21040OsAffx.24701.1.S1_at5/119+12684745..12685682expressed protein
LOC_Os09g21040OsAffx.13010.1.S1_x_at4/119+12684745..12685682expressed protein
LOC_Os09g21050OsAffx.17814.1.S1_at11/119+12692578..12693000hypothetical protein
LOC_Os09g21060OsAffx.29954.1.S1_at11/119+12695927..12696302expressed protein
LOC_Os09g21060OsAffx.29954.1.S1_s_at11/119+12695927..12696302expressed protein
LOC_Os09g21070OsAffx.17815.1.S1_at11/119+12701497..12701886hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31662.1.S2_at--208--31Chr09:12681322..12681346 (25 bp)
ATTGGATGCAATAATAGCTTCATCT
LOC_Os09g21020
Os.31662.1.S2_at--528--7974Chr09:12681325..12681349 (25 bp)
GGATGCAATAATAGCTTCATCTATA
LOC_Os09g21020
Os.31662.1.S2_at--286--9611Chr09:12681341..12681365 (25 bp)
TCATCTATATTTTGCTTATCTGGAT
LOC_Os09g21020
Os.31662.1.S2_at--320--9551Chr09:12681344..12681368 (25 bp)
TCTATATTTTGCTTATCTGGATTCC
LOC_Os09g21020
Os.31662.1.S2_at--525--3691Chr09:12681345..12681369 (25 bp)
CTATATTTTGCTTATCTGGATTCCA
LOC_Os09g21020
Os.31662.1.S2_at--737--231Chr09:12681347..12681371 (25 bp)
ATATTTTGCTTATCTGGATTCCAGA
LOC_Os09g21020
Os.31662.1.S2_at--293--10211Chr09:12681348..12681372 (25 bp)
TATTTTGCTTATCTGGATTCCAGAG
LOC_Os09g21020
Os.31662.1.S2_at--195--171Chr09:12681349..12681373 (25 bp)
ATTTTGCTTATCTGGATTCCAGAGG
LOC_Os09g21020
Os.31662.1.S2_at--1148--10271Chr09:12681351..12681375 (25 bp)
TTTGCTTATCTGGATTCCAGAGGAT
LOC_Os09g21020
Os.31662.1.S2_at--39--9471NONE
TCTGGATTCCAGAGGATGGGATCAC
NONE
Os.31662.1.S2_at--415--7931NONE
GGATTCCAGAGGATGGGATCACTTT
NONE
Target Sequence 
ATTGGATGCAATAATAGCTTCATCTATATTTTGCTTATCTGGATTCCAGAGGATGGGATCACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31662.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis