Browse Element(s) Details


OsAffx.20396.1.S1_at

Description gb:NM_196260.1
DB_XREF= gi:37533879
TID=OsAffx.20396.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) mudrA protein - maize transposon MuDR (OSJNBa0094J09.10), mRNA.
PROD=mudrA protein - maize transposon MuDR
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g248201/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24790Os.35344.3.S1_x_at11/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790Os.35344.18.S1_x_at10/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790OsAffx.22940.5.S1_x_at3/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24800OsAffx.30522.1.S1_at9/1110+12422526..12423202hypothetical protein
LOC_Os10g24810Os.5970.1.S1_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24810Os.46126.1.S1_x_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24810Os.46126.1.S1_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24820OsAffx.20396.1.S1_at1/1110+12437139..12438423transposon protein, putative, Mutator sub-class
LOC_Os10g24830NANA10+12438770..12440255hypothetical protein
LOC_Os10g24840OsAffx.20396.2.S1_s_at11/1110+12440600..12441173hypothetical protein
LOC_Os10g24850OsAffx.17811.1.S1_x_at2/1110+12452943..12453317hypothetical protein
LOC_Os10g24850OsAffx.20395.1.S1_at1/1110+12452943..12453317hypothetical protein
LOC_Os10g24860OsAffx.18385.1.S1_at11/1110+12454207..12454743hypothetical protein
LOC_Os10g24870OsAffx.20394.1.S1_at11/1110+12455141..12456691hypothetical protein
LOC_Os10g24870OsAffx.20394.1.S1_s_at9/1110+12455141..12456691hypothetical protein
LOC_Os10g24870OsAffx.20394.3.S1_at2/1110+12455141..12456691hypothetical protein
LOC_Os10g24880NANA10+12458760..12459299hypothetical protein
LOC_Os10g24890OsAffx.20394.3.S1_at11/1110+12462669..12463718hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20396.1.S1_at--1079--1091Chr10:12437267..12437291 (25 bp)
AGTGGTGCTCGAAGTCCTAGAGTAC
LOC_Os10g24820
OsAffx.20396.1.S1_at--515--3251Chr10:12436138..12436162 (25 bp)
CAACCAGCTCAGACAACTTGCAATT
NONE
OsAffx.20396.1.S1_at--396--5871Chr10:12436105..12436129 (25 bp)
GAGCCTCATGTTGAGCCTCAGTTAA
NONE
OsAffx.20396.1.S1_at--978--2551Chr10:12436082..12436106 (25 bp)
AACTGTTGCTGAAGCATGTCGATTC
NONE
OsAffx.20396.1.S1_at--585--7211Chr10:12436065..12436089 (25 bp)
GTCGATTCTTTCACCCAGATAATCT
NONE
OsAffx.20396.1.S1_at--676--1271Chr10:12436049..12436073 (25 bp)
AGATAATCTTGCACACCGGCCTGGC
NONE
OsAffx.20396.1.S1_at--133--6351Chr10:12435648..12435672 (25 bp)
GATGCCGCCTTCAAGATTCTAGGGT
NONE
OsAffx.20396.1.S1_at--712--6231Chr10:12435491..12435515 (25 bp)
GATGGCTTACAACCCAGCGACACGG
NONE
OsAffx.20396.1.S1_at--518--671NONE
ATGAAAATACGGCTGCGGGCTGCTC
NONE
OsAffx.20396.1.S1_at--90--9251Chr10:12433965..12433989 (25 bp)
TCCTTTTGATGCTCGTGCGGACTCA
NONE
OsAffx.20396.1.S1_at--944--1871Chr10:12433919..12433943 (25 bp)
ACGAGGTCGTGCAAGCTGCCGCCAC
NONE
Target Sequence 
AGTGGTGCTCGAAGTCCTAGAGTACAGAGGATAAGGGGTTGTCTAGAGCCGGGAAGAAAGAAGTTCATTGTCCTACAAAA
TCAACCAGCTCAGACAACTTGCAATTTTGATGTTGAGCCTCATGTTGAGCCTCAGTTAACTGTTGCTGAAGCATGTCGAT
TCTTTCACCCAGATAATCTTGCACACCGGCCTGGCATCGTCGTCGTCGCCGTCGCCTGCGCAACCGCCTCCGATGCCGCC
TTCAAGATTCTAGGGTTTCGGGAATGGATGGCGAGCTCGTCGAGCCAGACCACGATGGCTTACAACCCAGCGACACGGGG
GCATTTTGGTCCATATGAAAATACGGCTGCGGGCTGCTCTTGCTCAGCTGCTCCGCTGCCTCCGCAAGCTCCCGTGGCGG
TGTGGCCTGCTGCTGCTCCTTTTGATGCTCGTGCGGACTCACCGCCGCGTGCTCCGCTGCTCACGAGGTCGTGCAAGCTG
CCGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis