Browse Element(s) Details


OsAffx.20394.1.S1_at

Description gb:NM_196263.1
DB_XREF= gi:37533885
TID=OsAffx.20394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094J09.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2487011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24820OsAffx.20396.1.S1_at1/1110+12437139..12438423transposon protein, putative, Mutator sub-class
LOC_Os10g24830NANA10+12438770..12440255hypothetical protein
LOC_Os10g24840OsAffx.20396.2.S1_s_at11/1110+12440600..12441173hypothetical protein
LOC_Os10g24850OsAffx.17811.1.S1_x_at2/1110+12452943..12453317hypothetical protein
LOC_Os10g24850OsAffx.20395.1.S1_at1/1110+12452943..12453317hypothetical protein
LOC_Os10g24860OsAffx.18385.1.S1_at11/1110+12454207..12454743hypothetical protein
LOC_Os10g24870OsAffx.20394.1.S1_at11/1110+12455141..12456691hypothetical protein
LOC_Os10g24870OsAffx.20394.1.S1_s_at9/1110+12455141..12456691hypothetical protein
LOC_Os10g24870OsAffx.20394.3.S1_at2/1110+12455141..12456691hypothetical protein
LOC_Os10g24880NANA10+12458760..12459299hypothetical protein
LOC_Os10g24890OsAffx.20394.3.S1_at11/1110+12462669..12463718hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20394.1.S1_at--914--7571Chr10:12456458..12456482 (25 bp)
GGGCTGAGTTAGTGGAGGAGTTCAA
LOC_Os10g24870
OsAffx.20394.1.S1_at--1060--10491Chr10:12456443..12456462 (20 bp)
TTCAAGTTTGGAGAACATGGAGAGA
LOC_Os10g24870
OsAffx.20394.1.S1_at--522--6011Chr10:12456327..12456351 (25 bp)
GAGAGAGTCAACTGTTGTTGCCAAT
LOC_Os10g24870
OsAffx.20394.1.S1_at--1160--6011Chr10:12456325..12456349 (25 bp)
GAGAGTCAACTGTTGTTGCCAATGC
LOC_Os10g24870
OsAffx.20394.1.S1_at--284--6091Chr10:12456323..12456347 (25 bp)
GAGTCAACTGTTGTTGCCAATGCTG
LOC_Os10g24870
OsAffx.20394.1.S1_at--704--9711Chr10:12456320..12456344 (25 bp)
TCAACTGTTGTTGCCAATGCTGCCT
LOC_Os10g24870
OsAffx.20394.1.S1_at--721--2551Chr10:12456318..12456342 (25 bp)
AACTGTTGTTGCCAATGCTGCCTCT
LOC_Os10g24870
OsAffx.20394.1.S1_at--308--6691Chr10:12456311..12456335 (25 bp)
GTTGCCAATGCTGCCTCTTGCCGAA
LOC_Os10g24870
OsAffx.20394.1.S1_at--616--3191Chr10:12456306..12456330 (25 bp)
CAATGCTGCCTCTTGCCGAATAGAG
LOC_Os10g24870
OsAffx.20394.1.S1_at--107--631Chr10:12456304..12456328 (25 bp)
ATGCTGCCTCTTGCCGAATAGAGGA
LOC_Os10g24870
OsAffx.20394.1.S1_at--99--3831Chr10:12456301..12456325 (25 bp)
CTGCCTCTTGCCGAATAGAGGAAGA
LOC_Os10g24870
Target Sequence 
GGGCTGAGTTAGTGGAGGAGTTCAAGTTTGGAGAACATGGAGAGAGAGAGTCAACTGTTGTTGCCAATGCTGCCTCTTGC
CGAATAGAGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis