Browse Element(s) Details

Os.10002.1.S1_at

Description

gb:AK109386.2
DB_XREF= gi:42821701
TID=Os.10002.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-C09, full insert sequence.
FL= gb:AK109386.2
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g46950	7/11	transposon protein, putative, unclassified, expressed
LOC_Os03g43540	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g46900	OsAffx.31756.3.S1_x_at	11/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.3.S1_at	11/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.1.S1_x_at	10/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.1.S1_at	5/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.5.S1_x_at	1/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46910	Os.30239.1.S1_at	11/11	7	+	28043187..28044605	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910	Os.16866.2.A1_x_at	1/11	7	+	28043187..28044605	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910	Os.28438.4.S1_x_at	1/11	7	+	28043187..28044605	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920	Os.15281.1.S1_x_at	11/11	7	+	28049381..28051737	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920	Os.15281.1.S1_at	11/11	7	+	28049381..28051737	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920	Os.44598.1.S1_x_at	1/11	7	+	28049381..28051737	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46930	Os.44598.1.S1_x_at	11/11	7	+	28052133..28054681	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46940	Os.16866.2.A1_x_at	1/11	7	+	28056141..28057175	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46940	OsAffx.22529.1.S1_s_at	1/11	7	+	28056141..28057175	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46950	Os.32357.1.S1_x_at	11/11	7	+	28059684..28061571	transposon protein, putative, unclassified, expressed
LOC_Os07g46950	Os.32357.1.S1_at	8/11	7	+	28059684..28061571	transposon protein, putative, unclassified, expressed
LOC_Os07g46950	Os.10002.1.S1_at	7/11	7	+	28059684..28061571	transposon protein, putative, unclassified, expressed
LOC_Os07g46960	NA	NA	7	+	28064437..28065364	hypothetical protein
LOC_Os07g46970	NA	NA	7	+	28067733..28069627	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980	Os.16866.2.A1_x_at	11/11	7	+	28071673..28073174	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980	OsAffx.20394.1.S1_s_at	1/11	7	+	28071673..28073174	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980	Os.32357.1.S1_x_at	1/11	7	+	28071673..28073174	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46990	Os.4169.1.S1_at	11/11	7	+	28073855..28075969	Superoxide dismutase 2, putative, expressed
LOC_Os07g47000	Os.45962.1.S1_a_at	2/11	7	+	28076380..28078098	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10002.1.S1_at--928--917	2	Chr07:28060535..28060559 (25 bp)	TGCCGTGAGTGCTAGCTTAGTGGTT	LOC_Os07g46950
Os.10002.1.S1_at--452--367	6	Chr12:14680018..14680042 (25 bp)	CTTAGTGGTTGTGCTGCATGGCTTA	NONE
Os.10002.1.S1_at--22--41	2	Chr10:8452669..8452690 (22 bp)	ATCAGTAGTGGCTGATCGTGTTGCC	NONE
Os.10002.1.S1_at--177--669	4	Chr12:14680081..14680105 (25 bp)	GTTGCCAGGAGGTGAGAGTACATCT	NONE
Os.10002.1.S1_at--1115--227	1	Chr07:28060665..28060689 (25 bp)	AAATGTGGCGAAGGGATCAACTCAG	LOC_Os07g46950
Os.10002.1.S1_at--539--793	5	Chr10:8452848..8452872 (25 bp)	GGATTCTTGCATTTCTTTAGGCTTA	NONE
Os.10002.1.S1_at--938--829	3	Chr10:8452867..8452891 (25 bp)	GGCTTAAGCAGGTCATGTGCATCTT	NONE
Os.10002.1.S1_at--1142--253	1	NONE	AACTCTCTGTGTTTTGAGTCCTTGT	NONE
Os.10002.1.S1_at--380--747	1	Chr10:8452987..8453011 (25 bp)	GTGTGCGCTTGTGTTCTTGTGAGAT	NONE
Os.10002.1.S1_at--967--651	1	Chr10:8453031..8453055 (25 bp)	GATTTCCAACACATACATTCTTTTA	NONE
Os.10002.1.S1_at--897--979	1	Chr10:8453054..8453078 (25 bp)	TAAGCATCACGATTCAAGATCCGGT	NONE

Target Sequence

TGCCGTGAGTGCTAGCTTAGTGGTTGTGCTGCATGGCTTAGTGAGTAGAGAGATTGGCAGTGATCAGTAGTGGCTGATCG
TGTTGCCAGGAGGTGAGAGTACATCTAGCTAATTAGTTAGCCATGCATGCAAATGTGGCGAAGGGATCAACTCAGGAGCA
GGAAGCGGTCGAAGTTTGCATGGGCGCATGCATCGGAGATTGACCAGGAGATATTCTGTTAGACGTGGGTGAGTTTGTTA
TCTAGGATTCTTGCATTTCTTTAGGCTTAAGCAGGTCATGTGCATCTTTAAATAGAGATCAATGTAATCAGTTTCAGTGT
GAGAAAAAAACAAAAAGAAGTGCTACGCACTTGCAAACTCTCTGTGTTTTGAGTCCTTGTGTGTGTGCGCTTGTGTTCTT
GTGAGATTGAGTGAGTGAATAGCTTTGATTTCCAACACATACATTCTTTTAAGCATCACGATTCAAGATCCGGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis