Browse Element(s) Details

OsAffx.31756.1.S1_x_at

Description

gb:NM_186063.1
DB_XREF= gi:34899211
GEN=P0453E03.42
TID=OsAffx.31756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to FAR1 domain (P0453E03.42), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g46900	10/11	transposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g46860	OsAffx.28936.1.S1_at	11/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	OsAffx.28936.1.S1_x_at	11/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	Os.7935.2.S1_x_at	1/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46860	OsAffx.31756.5.S1_x_at	1/11	7	+	28012126..28013280	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46870	OsAffx.31756.5.S1_x_at	11/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	Os.53426.1.S1_at	4/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	Os.28282.2.S1_x_at	1/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	Os.7935.2.S1_x_at	1/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870	OsAffx.31756.3.S1_x_at	1/11	7	+	28017428..28020000	oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46880	NA	NA	7	+	28023724..28029879	transposon protein, putative, unclassified
LOC_Os07g46890	NA	NA	7	+	28030524..28033752	retrotransposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.3.S1_x_at	11/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.3.S1_at	11/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.1.S1_x_at	10/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.1.S1_at	5/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46900	OsAffx.31756.5.S1_x_at	1/11	7	+	28036333..28042118	transposon protein, putative, unclassified
LOC_Os07g46910	Os.30239.1.S1_at	11/11	7	+	28043187..28044605	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910	Os.16866.2.A1_x_at	1/11	7	+	28043187..28044605	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910	Os.28438.4.S1_x_at	1/11	7	+	28043187..28044605	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920	Os.15281.1.S1_x_at	11/11	7	+	28049381..28051737	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920	Os.15281.1.S1_at	11/11	7	+	28049381..28051737	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920	Os.44598.1.S1_x_at	1/11	7	+	28049381..28051737	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46930	Os.44598.1.S1_x_at	11/11	7	+	28052133..28054681	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46940	Os.16866.2.A1_x_at	1/11	7	+	28056141..28057175	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46940	OsAffx.22529.1.S1_s_at	1/11	7	+	28056141..28057175	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46950	Os.32357.1.S1_x_at	11/11	7	+	28059684..28061571	transposon protein, putative, unclassified, expressed
LOC_Os07g46950	Os.32357.1.S1_at	8/11	7	+	28059684..28061571	transposon protein, putative, unclassified, expressed
LOC_Os07g46950	Os.10002.1.S1_at	7/11	7	+	28059684..28061571	transposon protein, putative, unclassified, expressed
LOC_Os07g46960	NA	NA	7	+	28064437..28065364	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.31756.1.S1_x_at--1114--281	1	Chr07:28040310..28040334 (25 bp)	AAGTTGGTCACAATAGCTCTACATG	LOC_Os07g46900
OsAffx.31756.1.S1_x_at--882--157	1	Chr07:28040324..28040348 (25 bp)	AGCTCTACATGTCCTAATAATCCAG	LOC_Os07g46900
OsAffx.31756.1.S1_x_at--639--303	1	Chr07:28040342..28040366 (25 bp)	AATCCAGCTAATTTCAAGCGTATTG	LOC_Os07g46900
OsAffx.31756.1.S1_x_at--865--267	1	Chr07:28040357..28040381 (25 bp)	AAGCGTATTGCGGAGGCCAACAACA	LOC_Os07g46900
OsAffx.31756.1.S1_x_at--449--551	1	Chr07:28040385..28040409 (25 bp)	GAAAACGTAAGAGAGGTCGCCCAAG	LOC_Os07g46900
OsAffx.31756.1.S1_x_at--607--555	1	Chr07:28040440..28040464 (25 bp)	GAAAGCTGTGAGAAGGAACCTGATT	LOC_Os07g46900
OsAffx.31756.1.S1_x_at--918--543	1	Chr07:28040455..28040479 (25 bp)	GAACCTGATTGACGAATGGGCTGAA	LOC_Os07g46900
OsAffx.31756.1.S1_x_at--418--775	2	Chr07:28040519..28040543 (25 bp)	GGTGATGATGACTGTAGCGTGCAAA	LOC_Os07g46900
OsAffx.31756.1.S1_x_at--176--999	1	NONE	TAGCGTGCAAAGTGTCGTTAGTGGC	NONE
OsAffx.31756.1.S1_x_at--165--287	1	Chr07:28041771..28041791 (21 bp)	AAGTGTCGTTAGTGGCTTCTTCTCC	LOC_Os07g46900
OsAffx.31756.1.S1_x_at--50--409	1	Chr07:28041800..28041824 (25 bp)	CGACTCCCAGAGGTTGGCCGGCAAG	LOC_Os07g46900

Target Sequence

AAGTTGGTCACAATAGCTCTACATGTCCTAATAATCCAGCTAATTTCAAGCGTATTGCGGAGGCCAACAACAAGGGAAAA
CGTAAGAGAGGTCGCCCAAGAGGAAGTGGCGTTGGAGGTGGTCGTGGACGGAAAGCTGTGAGAAGGAACCTGATTGACGA
ATGGGCTGAAGGGCCTGTGGGAGGGGAGTGTAGCATGAGAAGCGAGGAGGGTGATGATGACTGTAGCGTGCAAAGTGTCG
TTAGTGGCTTCTTCTCCGCGGCCTCCGACTCCCAGAGGTTGGCCGGCAAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis