Browse Element(s) Details


Os.16866.2.A1_x_at

Description gb:NM_186072.1
DB_XREF= gi:34899229
GEN=OJ1343_D04.32
TID=Os.16866.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) alcohol dehydrogenase-like protein (OJ1343_D04.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) alcohol dehydrogenase-like protein (OJ1343_D04.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4698011/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g469401/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g469101/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46920Os.15281.1.S1_x_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.44598.1.S1_x_at1/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46930Os.44598.1.S1_x_at11/117+28052133..28054681oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46940Os.16866.2.A1_x_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46940OsAffx.22529.1.S1_s_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46950Os.32357.1.S1_x_at11/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.32357.1.S1_at8/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.10002.1.S1_at7/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46960NANA7+28064437..28065364hypothetical protein
LOC_Os07g46970NANA7+28067733..28069627NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980Os.16866.2.A1_x_at11/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980OsAffx.20394.1.S1_s_at1/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46980Os.32357.1.S1_x_at1/117+28071673..28073174NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46990Os.4169.1.S1_at11/117+28073855..28075969Superoxide dismutase 2, putative, expressed
LOC_Os07g47000Os.45962.1.S1_a_at2/117+28076380..28078098hypothetical protein
LOC_Os07g47010Os.41695.3.S1_x_at4/117+28087056..28091050SWIM zinc finger family protein
LOC_Os07g47010Os.41695.2.S1_x_at3/117+28087056..28091050SWIM zinc finger family protein
LOC_Os07g47010Os.41695.4.S1_x_at3/117+28087056..28091050SWIM zinc finger family protein
LOC_Os07g47010Os.41695.15.S1_s_at2/117+28087056..28091050SWIM zinc finger family protein
LOC_Os07g47010Os.41695.5.S1_x_at2/117+28087056..28091050SWIM zinc finger family protein
LOC_Os07g47020NANA7+28091333..28094259transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16866.2.A1_x_at--1134--7193Chr07:28072608..28072632 (25 bp)
GTCGTCTACAGCAACGCCGGCGTCA
LOC_Os07g46980
Os.16866.2.A1_x_at--463--2611Chr07:28072620..28072644 (25 bp)
AACGCCGGCGTCATAGGAGCACCGG
LOC_Os07g46980
Os.16866.2.A1_x_at--653--7131Chr07:28072629..28072653 (25 bp)
GTCATAGGAGCACCGGCTCCGGCCT
LOC_Os07g46980
Os.16866.2.A1_x_at--579--7071Chr07:28072698..28072722 (25 bp)
GTCAACGCCCGGTCGATGTTGGCGT
LOC_Os07g46980
Os.16866.2.A1_x_at--1061--4191Chr07:28072705..28072729 (25 bp)
CCCGGTCGATGTTGGCGTGCGTCAA
LOC_Os07g46980
Os.16866.2.A1_x_at--27--7211Chr07:28072709..28072733 (25 bp)
GTCGATGTTGGCGTGCGTCAAGCAC
LOC_Os07g46980
Os.16866.2.A1_x_at--173--9331Chr07:28072815..28072839 (25 bp)
TCGCCGGTGTACTCCATGTCGAAGG
LOC_Os07g46980
Os.16866.2.A1_x_at--866--6991Chr07:28072823..28072847 (25 bp)
GTACTCCATGTCGAAGGCGGCCATC
LOC_Os07g46980
Os.16866.2.A1_x_at--223--1831Chr07:28072929..28072953 (25 bp)
ACGCCGATGGCGCTAGGCATCATCG
LOC_Os07g46980
Os.16866.2.A1_x_at--487--3531Chr07:28073029..28073053 (25 bp)
CATCGCTGGAGGTGGAAGACGTGGC
LOC_Os07g46980
Os.16866.2.A1_x_at--786--8791Chr07:28073065..28073089 (25 bp)
TGTTCTTGGCGTCCGACGAGGCCAA
LOC_Os07g46980
Target Sequence 
GTCGTCTACAGCAACGCCGGCGTCATAGGAGCACCGGCTCCGGCCTCGCTCGCGGCGCTCGACCTCGACGAGTACGACCG
CGTCATGGCCGTCAACGCCCGGTCGATGTTGGCGTGCGTCAAGCACGCGGCGCGCGTCATGGCGCCGCGCCGCGCCGGCT
GCATCCTCTGCACGGCCAGCTCGGCGGCGGTGCTCGGCGGCGTGGCGTCGCCGGTGTACTCCATGTCGAAGGCGGCCATC
GTCGGCATGGTGCGCGCGGTGGCGAGGCAGCTGGCGCGCGACGGCGTGCGGGTGAACGCCATCTCGCCGCACGCCATCCC
GACGCCGATGGCGCTAGGCATCATCGCCGAGACGTTCCCGGCGGCCACCGCGGAGGAGGTGAGGAGGATGGTGACGAGGG
AGATGCAGGAGCTGGAAGGGACATCGCTGGAGGTGGAAGACGTGGCGAGGGCGGCCGTGTTCTTGGCGTCCGACGAGGCC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16866.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis