Browse Element(s) Details


Os.45962.1.S1_a_at

Description gb:NM_186077.1
DB_XREF= gi:34899239
GEN=P0450A04.8
TID=Os.45962.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU030766(E60209)~similar to serine protease (P0450A04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST AU030766(E60209)~similar to serine protease (P0450A04.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4703011/11expressed protein
LOC_Os07g470002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46990Os.4169.1.S1_at11/117+28073855..28075969Superoxide dismutase 2, putative, expressed
LOC_Os07g47000Os.45962.1.S1_a_at2/117+28076380..28078098hypothetical protein
LOC_Os07g47010Os.41695.3.S1_x_at4/117+28087056..28091050SWIM zinc finger family protein
LOC_Os07g47010Os.41695.2.S1_x_at3/117+28087056..28091050SWIM zinc finger family protein
LOC_Os07g47010Os.41695.4.S1_x_at3/117+28087056..28091050SWIM zinc finger family protein
LOC_Os07g47010Os.41695.15.S1_s_at2/117+28087056..28091050SWIM zinc finger family protein
LOC_Os07g47010Os.41695.5.S1_x_at2/117+28087056..28091050SWIM zinc finger family protein
LOC_Os07g47020NANA7+28091333..28094259transposon protein, putative, Mutator sub-class
LOC_Os07g47030Os.45962.1.S1_a_at11/117+28099592..28107839expressed protein
LOC_Os07g47040Os.8736.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040OsAffx.560.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.2.S1_x_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.1.S1_a_at11/117+28116394..28123660expressed protein
LOC_Os07g47050NANA7+28124725..28125967retrotransposon protein, putative, unclassified
LOC_Os07g47060OsAffx.16740.1.S1_at11/117+28128030..28128670hypothetical protein
LOC_Os07g47070OsAffx.16741.1.S1_s_at11/117+28132446..28138961expressed protein
LOC_Os07g47070Os.46037.1.S1_x_at11/117+28132446..28138961expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45962.1.S1_a_at--686--2812Chr07:28100831..28100854 (24 bp)
AAGATTGTTGTACACCTTCCAAACA
LOC_Os07g47030
Os.45962.1.S1_a_at--497--1072Chr07:28100793..28100817 (25 bp)
AGGGACATTGCAACATTATCATCTG
LOC_Os07g47030
Os.45962.1.S1_a_at--243--3551Chr07:28100745..28100769 (25 bp)
CATCAAAGGTTTTCGTTGTCTTCGT
LOC_Os07g47030
Os.45962.1.S1_a_at--164--7871Chr07:28100679..28100703 (25 bp)
GGTATTATCTGTAGGACGCGTCTTC
LOC_Os07g47030
Os.45962.1.S1_a_at--719--5791Chr07:28100665..28100689 (25 bp)
GACGCGTCTTCAAGTCAGCCAAATT
LOC_Os07g47030
Os.45962.1.S1_a_at--834--5311Chr07:28100588..28100612 (25 bp)
GAACTTAAGGTCTCCACTTGTAGAA
LOC_Os07g47030
Os.45962.1.S1_a_at--1126--7551Chr07:28100188..28100212 (25 bp)
GGGCCCCTGATTGATTGTCATGGTA
LOC_Os07g47030
Os.45962.1.S1_a_at--315--10551Chr07:28100161..28100185 (25 bp)
TTCGTTGGTATGAACTTCTACGGTA
LOC_Os07g47030
Os.45962.1.S1_a_at--1151--5511Chr07:28100135..28100159 (25 bp)
GAAAGAGACTCCGTATTTACCAAGG
LOC_Os07g47030
Os.45962.1.S1_a_at--552--7631Chr07:28099940..28099964 (25 bp)
GGGACATCTCTCCTGAGATTATGGA
LOC_Os07g47030
Os.45962.1.S1_a_at--8--3631Chr07:28099705..28099729 (25 bp)
CTTGAACCTGTTGCATTGGTTGCTA
LOC_Os07g47030
Target Sequence 
AAGATTGTTGTACACCTTCCAAACAAACAACAAACTGTAGGGACATTGCAACATTATCATCTGCATTACAATGTTGCTAT
TGTCAGCATCAAAGGTTTTCGTTGTCTTCGTACGGAAGAATTTCATGATCCAGGGCTAATTGAGCGTAAGGAGGTATTAT
CTGTAGGACGCGTCTTCAAGTCAGCCAAATTAATGGCCACAAGTGGGATATTGACTGACAAACCAAGCAAACTTGACTGC
AAAGAACTTAAGGTCTCCACTTGTAGAATCAGTAAGGCTGGGATTGGAGGGCCCCTGATTGATTGTCATGGTAATTTCGT
TGGTATGAACTTCTACGGTAGGAAAGAGACTCCGTATTTACCAAGGGATACAATTCTGAAATTATTGAGCTATTTTGATG
GAGAAGGGGACATCTCTCCTGAGATTATGGACAACCAAAACAGTCTTGAACCTGTTGCATTGGTTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45962.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis