Browse Element(s) Details


OsAffx.16741.1.S1_s_at

Description tigr:9635.m04740
TID=OsAffx.16741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4707011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47030Os.45962.1.S1_a_at11/117+28099592..28107839expressed protein
LOC_Os07g47040Os.8736.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040OsAffx.560.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.2.S1_x_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.1.S1_a_at11/117+28116394..28123660expressed protein
LOC_Os07g47050NANA7+28124725..28125967retrotransposon protein, putative, unclassified
LOC_Os07g47060OsAffx.16740.1.S1_at11/117+28128030..28128670hypothetical protein
LOC_Os07g47070OsAffx.16741.1.S1_s_at11/117+28132446..28138961expressed protein
LOC_Os07g47070Os.46037.1.S1_x_at11/117+28132446..28138961expressed protein
LOC_Os07g47080OsAffx.28938.1.S1_at11/117+28140917..28142084hypothetical protein
LOC_Os07g47090Os.35203.1.S1_at11/117+28144805..28147907kinase interacting family protein, putative, expressed
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16741.1.S1_s_at--499--5571Chr07:28138586..28138610 (25 bp)
GAAATGTTCAACACAAAGTTCGGTT
LOC_Os07g47070
OsAffx.16741.1.S1_s_at--217--6631Chr07:28138623..28138647 (25 bp)
GTTGGGACTCCCAAGACTGGAATTA
LOC_Os07g47070
OsAffx.16741.1.S1_s_at--8--2971Chr07:28138659..28138683 (25 bp)
AATGGCTGCTGATGGAAGATGCTGT
LOC_Os07g47070
OsAffx.16741.1.S1_s_at--351--6351Chr07:28138676..28138700 (25 bp)
GATGCTGTGGAAAAGCTACACTCAA
LOC_Os07g47070
OsAffx.16741.1.S1_s_at--491--4831Chr07:28138690..28138714 (25 bp)
GCTACACTCAAGTTGATCGGGCGGT
LOC_Os07g47070
OsAffx.16741.1.S1_s_at--470--6391Chr07:28138704..28138728 (25 bp)
GATCGGGCGGTTAGGAATCTTTTGT
LOC_Os07g47070
OsAffx.16741.1.S1_s_at--450--8271Chr07:28138735..28138759 (25 bp)
GGCAGGGATGGAATTTTGCTTCGTT
LOC_Os07g47070
OsAffx.16741.1.S1_s_at--826--3271Chr07:28138763..28138787 (25 bp)
CAAAACGTTTTTGGTCTGCCTGTAG
LOC_Os07g47070
OsAffx.16741.1.S1_s_at--703--4631Chr07:28138835..28138859 (25 bp)
GCGATAGGGCCTTAGCTGTTATTTT
LOC_Os07g47070
OsAffx.16741.1.S1_s_at--475--3671Chr07:28138866..28138890 (25 bp)
CTTTCCTTTGCTGTTCTTTTTCAGT
LOC_Os07g47070
OsAffx.16741.1.S1_s_at--879--6631Chr07:28138889..28138913 (25 bp)
GTTGTAATGAACTCTTGCATGCCAT
LOC_Os07g47070
Target Sequence 
GAAATGTTCAACACAAAGTTCGGTTGGAGGTTTGGGAGTTGGGACTCCCAAGACTGGAATTAGGAAGGAGGGGAATGGCT
GCTGATGGAAGATGCTGTGGAAAAGCTACACTCAAGTTGATCGGGCGGTTAGGAATCTTTTGTTCTTTTGGCAGGGATGG
AATTTTGCTTCGTTCTGCAAAACGTTTTTGGTCTGCCTGTAGACCATCTAGCCGTTGGCGTCTGTGTTTTCAGATTCTGA
ACCTTCTTGGCGATAGGGCCTTAGCTGTTATTTTCTTCTTCTTTCCTTTGCTGTTCTTTTTCAGTTGTAATGAACTCTTG
CATGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16741.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis