Browse Element(s) Details


Os.8736.2.S1_x_at

Description gb:NM_186080.1
DB_XREF= gi:34899245
GEN=P0450A04.11
TID=Os.8736.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C28770(C62315),AU093079(C62315)~unknown protein (P0450A04.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains ESTs C28770(C62315),AU093079(C62315)~unknown protein (P0450A04.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4704011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47020NANA7+28091333..28094259transposon protein, putative, Mutator sub-class
LOC_Os07g47030Os.45962.1.S1_a_at11/117+28099592..28107839expressed protein
LOC_Os07g47040Os.8736.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040OsAffx.560.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.2.S1_x_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.1.S1_a_at11/117+28116394..28123660expressed protein
LOC_Os07g47050NANA7+28124725..28125967retrotransposon protein, putative, unclassified
LOC_Os07g47060OsAffx.16740.1.S1_at11/117+28128030..28128670hypothetical protein
LOC_Os07g47070OsAffx.16741.1.S1_s_at11/117+28132446..28138961expressed protein
LOC_Os07g47070Os.46037.1.S1_x_at11/117+28132446..28138961expressed protein
LOC_Os07g47080OsAffx.28938.1.S1_at11/117+28140917..28142084hypothetical protein
LOC_Os07g47090Os.35203.1.S1_at11/117+28144805..28147907kinase interacting family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8736.2.S1_x_at--1055--10031Chr07:28121926..28121950 (25 bp)
TAGTATCTGTACAACCTGGCGAACG
LOC_Os07g47040
Os.8736.2.S1_x_at--535--1191Chr07:28121956..28121980 (25 bp)
AGTATCCGGTCTCATTCAGTACAGT
LOC_Os07g47040
Os.8736.2.S1_x_at--869--6031Chr07:28122031..28122055 (25 bp)
GAGATCCTGGATTTATGTCCGGCAT
LOC_Os07g47040
Os.8736.2.S1_x_at--466--5891Chr07:28122659..28122683 (25 bp)
GAGCGGCAAAATAATGCTGCGATCA
LOC_Os07g47040
Os.8736.2.S1_x_at--308--8191Chr07:28122684..28122708 (25 bp)
GGAAGAGTTATCACTAGTCATGAGA
LOC_Os07g47040
Os.8736.2.S1_x_at--535--5371Chr07:28122707..28122731 (25 bp)
GAAGAAGTTTGCTCTCACTTGTCCA
LOC_Os07g47040
Os.8736.2.S1_x_at--1121--3131Chr07:28122770..28122794 (25 bp)
AATTGGTGCCGCTGTATTTACGTTA
LOC_Os07g47040
Os.8736.2.S1_x_at--475--10271Chr07:28122845..28122869 (25 bp)
TTTGAAATTCGCCAGACACTCGTCT
LOC_Os07g47040
Os.8736.2.S1_x_at--167--9551Chr07:28122875..28122899 (25 bp)
TCTAGATGAGCTCAACCGCATGGTT
LOC_Os07g47040
Os.8736.2.S1_x_at--726--2891Chr07:28123140..28123164 (25 bp)
AAGGTCAGACCAACGTGGCTGCAGA
LOC_Os07g47040
Os.8736.2.S1_x_at--1047--2671Chr07:28123166..28123190 (25 bp)
AAGCGTGCTAAATATGCGGCCATAA
LOC_Os07g47040
Target Sequence 
TAGTATCTGTACAACCTGGCGAACGCCGCCAGTATCCGGTCTCATTCAGTACAGTACAAGCAAAAAGAGAGGAGATTTGT
ATGATTGCACGGGTCAATCATGACGGAGATCCTGGATTTATGTCCGGCATTGTAGCCCCGAGCGGCAAAATAATGCTGCG
ATCAGGAAGAGTTATCACTAGTCATGAGAAGAAGTTTGCTCTCACTTGTCCACATGGAAGACGAGGAAATGTGGTTGCGG
AAGGAAATTTAATTGGTGCCGCTGTATTTACGTTAAGTGGTTTGGTTGTGGGGACAATCGATTCTGTTGTTAGTGGTTGC
TTCGGTTTGAAATTCGCCAGACACTCGTCTTTTTTTCTAGATGAGCTCAACCGCATGGTTCATAAGGAACTCAAGAAGGT
TTCACTTTCGAGAGGTGCAACTCCCCTTTCAAGGGGTTCAAAGGTTGTACATGTTGGTAGTACAAGTAAATCCCATGAAG
GTCAGACCAACGTGGCTGCAGAAAAGCGTGCTAAATATGCGGCCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8736.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis