Browse Element(s) Details


OsAffx.16740.1.S1_at

Description tigr:9635.m04739
TID=OsAffx.16740.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4706011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47030Os.45962.1.S1_a_at11/117+28099592..28107839expressed protein
LOC_Os07g47040Os.8736.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040OsAffx.560.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.2.S1_x_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.1.S1_a_at11/117+28116394..28123660expressed protein
LOC_Os07g47050NANA7+28124725..28125967retrotransposon protein, putative, unclassified
LOC_Os07g47060OsAffx.16740.1.S1_at11/117+28128030..28128670hypothetical protein
LOC_Os07g47070OsAffx.16741.1.S1_s_at11/117+28132446..28138961expressed protein
LOC_Os07g47070Os.46037.1.S1_x_at11/117+28132446..28138961expressed protein
LOC_Os07g47080OsAffx.28938.1.S1_at11/117+28140917..28142084hypothetical protein
LOC_Os07g47090Os.35203.1.S1_at11/117+28144805..28147907kinase interacting family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16740.1.S1_at--1087--6131Chr07:28128080..28128104 (25 bp)
GAGGGATAACAGAAGCCTGCACCAA
LOC_Os07g47060
OsAffx.16740.1.S1_at--935--9031Chr07:28128097..28128121 (25 bp)
TGCACCAAGCAAGAGAGGGCGTCAT
LOC_Os07g47060
OsAffx.16740.1.S1_at--23--1051Chr07:28128127..28128151 (25 bp)
AGGTGCCCGAGAAGCGATGCCAAAA
LOC_Os07g47060
OsAffx.16740.1.S1_at--50--4371Chr07:28128145..28128169 (25 bp)
GCCAAAAGTCGGTGGTGGACTCAGT
LOC_Os07g47060
OsAffx.16740.1.S1_at--174--5371Chr07:28128448..28128472 (25 bp)
GAAGAGAGCCATTACCGACGACGAT
LOC_Os07g47060
OsAffx.16740.1.S1_at--829--6971Chr07:28128516..28128540 (25 bp)
GTACCGGTGTTAGAAGTCACGTGGA
LOC_Os07g47060
OsAffx.16740.1.S1_at--530--7091Chr07:28128531..28128555 (25 bp)
GTCACGTGGAAAGAGGCACCCGAAT
LOC_Os07g47060
OsAffx.16740.1.S1_at--1158--1311Chr07:28128542..28128566 (25 bp)
AGAGGCACCCGAATCCATATACCAT
LOC_Os07g47060
OsAffx.16740.1.S1_at--800--571Chr07:28128554..28128578 (25 bp)
ATCCATATACCATTCGTCAGACAGT
LOC_Os07g47060
OsAffx.16740.1.S1_at--182--9411Chr07:28128567..28128591 (25 bp)
TCGTCAGACAGTGGTTGCGCTCAAG
LOC_Os07g47060
OsAffx.16740.1.S1_at--823--1431Chr07:28128616..28128640 (25 bp)
AGAACTCGTGAGTCCCACTGGAGTT
LOC_Os07g47060
Target Sequence 
GAGGGATAACAGAAGCCTGCACCAAGCAAGAGAGGGCGTCATGGCCAAGGTGCCCGAGAAGCGATGCCAAAAGTCGGTGG
TGGACTCAGTGGTGATGAAGGCACGAGCGGAGGCCATGGAAGTAAAAGCATCAATCGAAAATAGGAAGAAGAGAGCCATT
ACCGACGACGATGTGAGAAGGTGTGGAGGATATAGGTGTATGGGAAAGGGAAAGGGTACCGGTGTTAGAAGTCACGTGGA
AAGAGGCACCCGAATCCATATACCATTCGTCAGACAGTGGTTGCGCTCAAGGTGGTGGTGTTGTAGGTGCTGGCGAGAAC
TCGTGAGTCCCACTGGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis