Browse Element(s) Details


Os.35203.1.S1_at

Description gb:AK068545.1
DB_XREF= gi:32978562
TID=Os.35203.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome1, F21B7.9 (P0450A04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156C01, full insert sequence.
FL= gb:AK068545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4709011/11kinase interacting family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47040Os.8736.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040OsAffx.560.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.2.S1_x_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.1.S1_a_at11/117+28116394..28123660expressed protein
LOC_Os07g47050NANA7+28124725..28125967retrotransposon protein, putative, unclassified
LOC_Os07g47060OsAffx.16740.1.S1_at11/117+28128030..28128670hypothetical protein
LOC_Os07g47070OsAffx.16741.1.S1_s_at11/117+28132446..28138961expressed protein
LOC_Os07g47070Os.46037.1.S1_x_at11/117+28132446..28138961expressed protein
LOC_Os07g47080OsAffx.28938.1.S1_at11/117+28140917..28142084hypothetical protein
LOC_Os07g47090Os.35203.1.S1_at11/117+28144805..28147907kinase interacting family protein, putative, expressed
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os07g47110Os.21061.1.S1_at11/117+28171525..28175126Tubby protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35203.1.S1_at--522--2491Chr07:28145347..28145371 (25 bp)
AACATGGCCCTGAAGGCGGAGCTCG
LOC_Os07g47090
Os.35203.1.S1_at--513--5951Chr07:28145254..28145278 (25 bp)
GAGAATTTCACCTTGCGGGAGTACA
LOC_Os07g47090
Os.35203.1.S1_at--718--4291Chr07:28145199..28145223 (25 bp)
CCTCTCGTGGCTTCGATTTCAAGAA
LOC_Os07g47090
Os.35203.1.S1_at--1047--951Chr07:28145166..28145190 (25 bp)
AGGACCTGTTCACTGCGAAGCTCTT
LOC_Os07g47090
Os.35203.1.S1_at--661--5171Chr07:28145130..28145154 (25 bp)
GCAAGGCTACTACAGGTCCAATGGT
LOC_Os07g47090
Os.35203.1.S1_at--598--7791Chr07:28145116..28145140 (25 bp)
GGTCCAATGGTTGCTCTATGAGCTC
LOC_Os07g47090
Os.35203.1.S1_at--362--4811Chr07:28145095..28145119 (25 bp)
GCTCGGTGCAGCTGATGAACTATTT
LOC_Os07g47090
Os.35203.1.S1_at--113--7191Chr07:28144956..28144980 (25 bp)
GTCTGTCTGTTTGTTCTATTCTTAT
LOC_Os07g47090
Os.35203.1.S1_at--101--1331Chr07:28144916..28144940 (25 bp)
AGAGGATTCGTTTTGACTGTCCCTG
LOC_Os07g47090
Os.35203.1.S1_at--16--1971Chr07:28144901..28144925 (25 bp)
ACTGTCCCTGTGAAATACCCATGTG
LOC_Os07g47090
Os.35203.1.S1_at--658--9951Chr07:28144886..28144910 (25 bp)
TACCCATGTGCATCAGTACTTACTG
LOC_Os07g47090
Target Sequence 
AACATGGCCCTGAAGGCGGAGCTCGCGGCGAAAGACGAGGAGAAGAGGGAGGTGATCAGGCAGCTCGCGTCGTCGTTCGA
CATCGTCAAGAAGGAGAATTTCACCTTGCGGGAGTACATCATCAAGAACTCNAAGAACTCCTCCTCCTCCTCTCGTGGCT
TCGATTTCAAGAAGCTGACCAAGGACCTGTTCACTGCGAAGCTCTTCACAGCTCACTGCAAGGCTACTACAGGTCCAATG
GTTGCTCTATGAGCTCGGTGCAGCTGATGAACTATTTCAGAGAGAAAACGGCGTGCACACCATCCTCCTGACAAACCATT
AGATCCATGAGAATTGTTGTAGCTCATGTGCATATAGATAGATACTATAAGCATGTGCCCCCTCCCTCCCTGTCTGTCTG
TTTGTTCTATTCTTATTCAGGTTTAGACAGTAGAGGATTCGTTTTGACTGTCCCTGTGAAATACCCATGTGCATCAGTAC
TTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis