Browse Element(s) Details


Os.21061.1.S1_at

Description gb:AK060587.1
DB_XREF= gi:32970605
TID=Os.21061.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU068695(C50045),AU166730(C50045)~similar to tubby protein (P0450A04.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B07, full insert sequence.
FL= gb:AK071159.1 gb:AK060587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4711011/11Tubby protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47090Os.35203.1.S1_at11/117+28144805..28147907kinase interacting family protein, putative, expressed
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os07g47110Os.21061.1.S1_at11/117+28171525..28175126Tubby protein, putative, expressed
LOC_Os07g47120OsAffx.28939.1.S1_at11/117+28177186..28179885Glycosyl hydrolase family 14 protein, expressed
LOC_Os07g47130OsAffx.27556.1.S1_s_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47130OsAffx.27556.1.S1_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47140Os.46006.1.S1_at11/117+28183185..28186149CCT motif family protein, expressed
LOC_Os07g47150Os.33980.2.S1_x_at11/117+28188186..28191119expressed protein
LOC_Os07g47150Os.33980.1.S1_at11/117+28188186..28191119expressed protein
LOC_Os07g47160OsAffx.28940.1.S1_at11/117+28192040..28193067F-box domain containing protein
LOC_Os07g47170OsAffx.16742.1.S1_at11/117+28195151..28196385F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21061.1.S1_at--724--6551Chr07:28174564..28174588 (25 bp)
GATTACCGCTATCCTATCTCGGCAT
LOC_Os07g47110
Os.21061.1.S1_at--911--451Chr07:28174579..28174603 (25 bp)
ATCTCGGCATTTCAGGCGTTTGCGA
LOC_Os07g47110
Os.21061.1.S1_at--551--3491Chr07:28174591..28174615 (25 bp)
CAGGCGTTTGCGATATGTCTGAGCA
LOC_Os07g47110
Os.21061.1.S1_at--352--771Chr07:28174605..28174629 (25 bp)
ATGTCTGAGCAGCTTTGACACCAAA
LOC_Os07g47110
Os.21061.1.S1_at--471--7351Chr07:28174645..28174669 (25 bp)
GTGAAGGTGTGATTCTTTCTTCCAT
LOC_Os07g47110
Os.21061.1.S1_at--677--651Chr07:28174714..28174738 (25 bp)
ATGCACTCTGCTTAGTTGCTTCCAC
LOC_Os07g47110
Os.21061.1.S1_at--1088--7051Chr07:28174813..28174837 (25 bp)
GTAACCTGCAATTTAGCTTTCTTGA
LOC_Os07g47110
Os.21061.1.S1_at--307--2631Chr07:28174847..28174871 (25 bp)
AACCTGCAACATTTGAGTGACTTGT
LOC_Os07g47110
Os.21061.1.S1_at--468--6471Chr07:28174899..28174923 (25 bp)
GATAACCACAATTGACAGCTCAGGA
LOC_Os07g47110
Os.21061.1.S1_at--607--10431Chr07:28174982..28175006 (25 bp)
TTATGTTACATTCTTCTATTACCAG
LOC_Os07g47110
Os.21061.1.S1_at--896--731Chr07:28175085..28175109 (25 bp)
ATGTTCTGGCTCAATTGTTCATGGA
LOC_Os07g47110
Target Sequence 
GATTACCGCTATCCTATCTCGGCATTTCAGGCGTTTGCGATATGTCTGAGCAGCTTTGACACCAAAATAGCGTGCGAATG
AGTGAAGGTGTGATTCTTTCTTCCATGATNNNNCGAATGAACCGTTTCCTGATNACCCACATTGCAAGCTGGCCATGCAC
TCTGCTTAGTTGCTTCCACCTTTTGGAAGCATGCAGAATAGAGACATAAATAAAAGTTGCTTTANATCTAACATTTTAGT
TGGNTAGGGATATGTAACCTGCAATTTAGCTTTCTTGAAGTATGTTCAACCTGCAACATTTGAGTGACTTGTAAGTCTTG
AGTTTAACTACAGGTGTTGGATAACCACAATTGACAGCTCAGGATTATGTGTATACTTGTCCCTTTGGAAATCCATAGAT
GTATCTGTTTGCATAGATATGNTTATGTTACATTCTTCTATTACCAGAATGAAGCAGAGCTATTNGGATCTTGTTTCAAA
AANNANNNNAAATGTACATGAGACCCTTTTTTTTCACATCGAATAATGTTCTGGCTCAATTGTTCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis