Browse Element(s) Details


OsAffx.16742.1.S1_at

Description tigr:9635.m04751
TID=OsAffx.16742.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4717011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47110Os.21061.1.S1_at11/117+28171525..28175126Tubby protein, putative, expressed
LOC_Os07g47120OsAffx.28939.1.S1_at11/117+28177186..28179885Glycosyl hydrolase family 14 protein, expressed
LOC_Os07g47130OsAffx.27556.1.S1_s_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47130OsAffx.27556.1.S1_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47140Os.46006.1.S1_at11/117+28183185..28186149CCT motif family protein, expressed
LOC_Os07g47150Os.33980.2.S1_x_at11/117+28188186..28191119expressed protein
LOC_Os07g47150Os.33980.1.S1_at11/117+28188186..28191119expressed protein
LOC_Os07g47160OsAffx.28940.1.S1_at11/117+28192040..28193067F-box domain containing protein
LOC_Os07g47170OsAffx.16742.1.S1_at11/117+28195151..28196385F-box domain containing protein
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47210Os.51144.1.S1_at11/117+28220891..28223204GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16742.1.S1_at--595--5931Chr07:28195861..28195885 (25 bp)
GAGAGTTCGGGTTCTACTTCCACCT
LOC_Os07g47170
OsAffx.16742.1.S1_at--816--2051Chr07:28195846..28195870 (25 bp)
ACTTCCACCTTCAGTACGACGAGTA
LOC_Os07g47170
OsAffx.16742.1.S1_at--116--6091Chr07:28195826..28195850 (25 bp)
GAGTACCACTTGCTTTGCCATTGCA
LOC_Os07g47170
OsAffx.16742.1.S1_at--323--5111Chr07:28195647..28195828 (25 bp)
GCACTATGAACCTCGCGGGAAGGCT
LOC_Os07g47170
OsAffx.16742.1.S1_at--480--3251Chr07:28195619..28195643 (25 bp)
CAACCATATGGTGGCGTTTGACATG
LOC_Os07g47170
OsAffx.16742.1.S1_at--774--6851Chr07:28195604..28195628 (25 bp)
GTTTGACATGGTTGCCGAGACGTTC
LOC_Os07g47170
OsAffx.16742.1.S1_at--184--2291Chr07:28195575..28195599 (25 bp)
AAATGATGCCGCCTCTAGTGACCAC
LOC_Os07g47170
OsAffx.16742.1.S1_at--842--1211Chr07:28195500..28195524 (25 bp)
AGTTCACGGACTTGGGCATGGACCT
LOC_Os07g47170
OsAffx.16742.1.S1_at--587--811Chr07:28195409..28195433 (25 bp)
ATGGCAGCTAAGTGCAACCCTTAAA
LOC_Os07g47170
OsAffx.16742.1.S1_at--1105--10171Chr07:28195296..28195320 (25 bp)
TATTCAGGGTTGTCGTCACCGTCAA
LOC_Os07g47170
OsAffx.16742.1.S1_at--934--1131Chr07:28195223..28195247 (25 bp)
AGTGCCACACACTTTCTTCAACAAT
LOC_Os07g47170
Target Sequence 
GAGAGTTCGGGTTCTACTTCCACCTTCAGTACGACGAGTACCACTTGCTTTGCCATTGCACTATGAACCTCGCGGGAAGG
CTCACCAACCATATGGTGGCGTTTGACATGGTTGCCGAGACGTTCAAGGAAATGATGCCGCCTCTAGTGACCACGAAGTT
CTTTGCAAACCTGCTAGCCATGGATAAGTTCCTCATGGCATCAAAGTTCACGGACTTGGGCATGGACCTCTGGGTCTTGG
AGGGCTATGGAGTCATGGACGAGAGGTGGGAGCTCTGGCACCACGTCGTACTGCCATGGCAGCTAAGTGCAACCCTTAAA
CGTCCACTTCTCATCGAGGGAGGTGATAGCGGCGATGTCATAATGGGGACAACCTATGACTTGGGGGTGTACAATGTGAA
GAGCAAGATATTCAGGGTTGTCGTCACCGTCAAACCGCCCGATGCCCTTCTCCTGTCACGGGACATGCTCAGGGAGAGCC
TAGTGCCACACACTTTCTTCAACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis