Browse Element(s) Details


OsAffx.28940.1.S1_at

Description tigr:9635.m04750
TID=OsAffx.28940.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4716011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os07g47110Os.21061.1.S1_at11/117+28171525..28175126Tubby protein, putative, expressed
LOC_Os07g47120OsAffx.28939.1.S1_at11/117+28177186..28179885Glycosyl hydrolase family 14 protein, expressed
LOC_Os07g47130OsAffx.27556.1.S1_s_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47130OsAffx.27556.1.S1_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47140Os.46006.1.S1_at11/117+28183185..28186149CCT motif family protein, expressed
LOC_Os07g47150Os.33980.2.S1_x_at11/117+28188186..28191119expressed protein
LOC_Os07g47150Os.33980.1.S1_at11/117+28188186..28191119expressed protein
LOC_Os07g47160OsAffx.28940.1.S1_at11/117+28192040..28193067F-box domain containing protein
LOC_Os07g47170OsAffx.16742.1.S1_at11/117+28195151..28196385F-box domain containing protein
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28940.1.S1_at--18--10351Chr07:28192576..28192600 (25 bp)
TTTAGTACCACCCAATACACCAGAT
LOC_Os07g47160
OsAffx.28940.1.S1_at--1--891Chr07:28192527..28192551 (25 bp)
ATGGCCACTTGCATTGGCTGCAGCA
LOC_Os07g47160
OsAffx.28940.1.S1_at--521--2731Chr07:28192444..28192468 (25 bp)
AAGCAAATGACGTCGCCTCCAGTGA
LOC_Os07g47160
OsAffx.28940.1.S1_at--84--4291Chr07:28192429..28192453 (25 bp)
CCTCCAGTGACCTCAAAGTTCTTTG
LOC_Os07g47160
OsAffx.28940.1.S1_at--82--10671Chr07:28192381..28192405 (25 bp)
TTCCTCATGGCATCAGAGTTCACAT
LOC_Os07g47160
OsAffx.28940.1.S1_at--655--311Chr07:28192358..28192382 (25 bp)
ATACTTGGGCGTGGACCTATGGGTC
LOC_Os07g47160
OsAffx.28940.1.S1_at--1080--1791Chr07:28192290..28192314 (25 bp)
ACCGCGTCGTGCTGCCATGGATGAG
LOC_Os07g47160
OsAffx.28940.1.S1_at--92--3591Chr07:28192161..28192185 (25 bp)
CATTCAGGACTGTCATCACCGTCAA
LOC_Os07g47160
OsAffx.28940.1.S1_at--121--9571Chr07:28192121..28192145 (25 bp)
TCTTCTATCGCGGAACATGCTTAGG
LOC_Os07g47160
OsAffx.28940.1.S1_at--999--10071Chr07:28192100..28192124 (25 bp)
TAGGGAGAGCCTGGTGCCACACACC
LOC_Os07g47160
OsAffx.28940.1.S1_at--143--3311Chr07:28192083..28192107 (25 bp)
CACACACCTTCTTCGATAATCAACA
LOC_Os07g47160
Target Sequence 
TTTAGTACCACCCAATACACCAGATCAATGATGACGCCGGCTGCTCTTCATGGCCACTTGCATTGGCTGCAGCATCCGGA
GGGCAGGCTCACCAACCATATGGCGGTGTTCAACATGGTTGACGAGACATTCAAGCAAATGACGTCGCCTCCAGTGACCT
CAAAGTTCTTTGCAGACCTGCTAGCCATAGATAAGTTCCTCATGGCATCAGAGTTCACATACTTGGGCGTGGACCTATGG
GTCATGGAGGGTTATGGAGCCATGGATGAGAGGTGGGAGCTCCGTCACCGCGTCGTGCTGCCATGGATGAGAGGTATGAC
CCTCGAACGTCCTCTCCTCATTGAGGGAGGCAATGATAGTGATGTCATTATGGGGACCGCCTATGGCTTGGGGGTGTACA
ACGTGAAGAGCAAGACATTCAGGACTGTCATCACCGTCAAGCCGCCCGACGCCCTTCTTCTATCGCGGAACATGCTTAGG
GAGAGCCTGGTGCCACACACCTTCTTCGATAATCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis