Browse Element(s) Details


Os.33980.1.S1_at

Description gb:AK073297.1
DB_XREF= gi:32983320
TID=Os.33980.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU172717(E10744),AU172716(E10744)~similar to Arabidopsis thaliana chromosome 3, At3g05100~unknown protein (P0450A04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027J22, full insert sequence.
FL= gb:AK073297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4715011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os07g47110Os.21061.1.S1_at11/117+28171525..28175126Tubby protein, putative, expressed
LOC_Os07g47120OsAffx.28939.1.S1_at11/117+28177186..28179885Glycosyl hydrolase family 14 protein, expressed
LOC_Os07g47130OsAffx.27556.1.S1_s_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47130OsAffx.27556.1.S1_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47140Os.46006.1.S1_at11/117+28183185..28186149CCT motif family protein, expressed
LOC_Os07g47150Os.33980.2.S1_x_at11/117+28188186..28191119expressed protein
LOC_Os07g47150Os.33980.1.S1_at11/117+28188186..28191119expressed protein
LOC_Os07g47160OsAffx.28940.1.S1_at11/117+28192040..28193067F-box domain containing protein
LOC_Os07g47170OsAffx.16742.1.S1_at11/117+28195151..28196385F-box domain containing protein
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33980.1.S1_at--593--8191Chr07:28189847..28189871 (25 bp)
GGAAGCACACTCATGATAGCTTGTT
LOC_Os07g47150
Os.33980.1.S1_at--81--7491Chr07:28189748..28189772 (25 bp)
GTGTGGCATCCATTTTGTAATTTTG
LOC_Os07g47150
Os.33980.1.S1_at--773--1351Chr07:28189709..28189733 (25 bp)
AGAGCAAGCTATGGCCTGTAGTTGT
LOC_Os07g47150
Os.33980.1.S1_at--600--8751Chr07:28189687..28189711 (25 bp)
TGTATGCCAATGAGCTCTGACCTGA
LOC_Os07g47150
Os.33980.1.S1_at--182--1591Chr07:28189675..28189699 (25 bp)
AGCTCTGACCTGAGATCGAGATCAT
LOC_Os07g47150
Os.33980.1.S1_at--774--9351Chr07:28189660..28189684 (25 bp)
TCGAGATCATTGTTTGCTGGGTGTT
LOC_Os07g47150
Os.33980.1.S1_at--299--7711Chr07:28189642..28189666 (25 bp)
GGGTGTTGGTTCACTTTCGACCACA
LOC_Os07g47150
Os.33980.1.S1_at--846--5851Chr07:28189624..28189648 (25 bp)
GACCACACACAACACTCAGGATGAA
LOC_Os07g47150
Os.33980.1.S1_at--695--671Chr07:28189604..28189628 (25 bp)
ATGAAAGATCCAATCGCCCTTGAGC
LOC_Os07g47150
Os.33980.1.S1_at--125--8931Chr07:28189587..28189608 (22 bp)
TGAGCCTTCCGAATTACATCTGCCA
LOC_Os07g47150
Os.33980.1.S1_at--792--8751Chr07:28188443..28188467 (25 bp)
TGTATTGCAGGTGGCAGCATCACAC
LOC_Os07g47150
Target Sequence 
GGAAGCACACTCATGATAGCTTGTTGTTCAACCATTATGAGATATGGTTTGAATTCCGAAGGCCAAAAGTTTAAGTCTTG
ATAGTTGGAAGATAGACTGGTGTGGCATCCATTTTGTAATTTTGGTGGTGTGAAGTGCAGAGCAAGCTATGGCCTGTAGT
TGTATGCCAATGAGCTCTGACCTGAGATCGAGATCATTGTTTGCTGGGTGTTGGTTCACTTTCGACCACACACAACACTC
AGGATGAAAGATCCAATCGCCCTTGAGCCTTCCGAATTACATCTGCCAGTGTATTGCAGGTGGCAGCATCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis