Browse Element(s) Details


Os.20983.1.S1_at

Description gb:CA757094
DB_XREF= gi:25801133
DB_XREF=BR050005000D08.ab1
CLONE=BR050005000D08.ab1
TID=Os.20983.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.20983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CRK1 protein(cdc2-related kinase 1) (P0450A04.34), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4718011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47120OsAffx.28939.1.S1_at11/117+28177186..28179885Glycosyl hydrolase family 14 protein, expressed
LOC_Os07g47130OsAffx.27556.1.S1_s_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47130OsAffx.27556.1.S1_at11/117+28180585..28181497hypothetical protein
LOC_Os07g47140Os.46006.1.S1_at11/117+28183185..28186149CCT motif family protein, expressed
LOC_Os07g47150Os.33980.2.S1_x_at11/117+28188186..28191119expressed protein
LOC_Os07g47150Os.33980.1.S1_at11/117+28188186..28191119expressed protein
LOC_Os07g47160OsAffx.28940.1.S1_at11/117+28192040..28193067F-box domain containing protein
LOC_Os07g47170OsAffx.16742.1.S1_at11/117+28195151..28196385F-box domain containing protein
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47210Os.51144.1.S1_at11/117+28220891..28223204GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g47220OsAffx.22523.1.S1_at11/117+28224076..28224486hypothetical protein
LOC_Os07g47230OsAffx.16746.1.S1_at11/117+28226876..28230131Protein kinase domain containing protein, expressed
LOC_Os07g47240Os.37554.1.S1_at11/117+28231562..28232948expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20983.1.S1_at--627--3311Chr07:28208476..28208500 (25 bp)
CACTGTGTTCCCCTACGAGAAAGGC
LOC_Os07g47180
Os.20983.1.S1_at--513--1411Chr07:28208493..28208517 (25 bp)
AGAAAGGCTCTGTGCCTACTTGGTC
LOC_Os07g47180
Os.20983.1.S1_at--1055--7791Chr07:28208514..28208538 (25 bp)
GGTCTGGACCATTGGCCGATCCTTC
LOC_Os07g47180
Os.20983.1.S1_at--358--4031Chr07:28208530..28208554 (25 bp)
CGATCCTTCTTCAGGCAACCAGAAG
LOC_Os07g47180
Os.20983.1.S1_at--319--5531Chr07:28208556..28208580 (25 bp)
GAAAACACAAGTCTGGCCGCTCTTC
LOC_Os07g47180
Os.20983.1.S1_at--907--311Chr07:28208667..28208691 (25 bp)
ATACTGGCAGCGGTTCTTGCAAAGT
LOC_Os07g47180
Os.20983.1.S1_at--591--2911Chr07:28208767..28208791 (25 bp)
AAGGATTCTTTTTTCGAACAGCAGT
LOC_Os07g47180
Os.20983.1.S1_at--409--3151Chr07:28208824..28208848 (25 bp)
AATTCTGTACATTAGGTTCTCTTTT
LOC_Os07g47180
Os.20983.1.S1_at--718--1011Chr07:28208837..28208861 (25 bp)
AGGTTCTCTTTTCCATTCTTACAAG
LOC_Os07g47180
Os.20983.1.S1_at--493--8171Chr07:28208906..28208930 (25 bp)
GGAACTTTCAGATCTACTTAGCATG
LOC_Os07g47180
Os.20983.1.S1_at--396--591Chr07:28208976..28209000 (25 bp)
ATCCAATACCATTTCATCTGATGTG
LOC_Os07g47180
Target Sequence 
CACTGTGTTCCCCTACGAGAAAGGCTCTGTGCCTACTTGGTCTGGACCATTGGCCGATCCTTCTTCAGGCAACCAGAAGC
GAAAACACAAGTCTGGCCGCTCTTCAAAACAACCGGCTACCGCCCGTGCTCGATGATCTATTATATGATGTCTAGTGCAT
AAGAAGTCTTCAATACTAAAAAGGAAAAAAAATACTGGCAGCGGTTCTTGCAAAGTGAGACAATTTAATTGCAAATCAAG
GCAAGCAACGATGAATTTTTTTNCTCTTAGATCCATGAATTCATTCCATGTAAGGATTCTTTTTTCGAACAGCAGTGTAT
AGGCCGGAGAGGGAGCTCAATTAGTCAAAATTCTGTACATTAGGTTCTCTTTTCCATTCTTACAAGCAGGCAAGCAGCTA
TATGTCATGTTAGATTTATGATTCAGTAATGGAACTTTCAGATCTACTTAGCATGTCANNNNNNNCTCTCTTACTTTCAA
ATATAGCTTATGTACAACCAATCCAATACCATTTCATCTGATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis