Browse Element(s) Details


Os.37554.1.S1_at

Description gb:AK108315.1
DB_XREF= gi:32993524
TID=Os.37554.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) zinc finger transcription factor-like protein (P0625E02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-G08, full insert sequence.
FL= gb:AK108315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4724011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47210Os.51144.1.S1_at11/117+28220891..28223204GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g47220OsAffx.22523.1.S1_at11/117+28224076..28224486hypothetical protein
LOC_Os07g47230OsAffx.16746.1.S1_at11/117+28226876..28230131Protein kinase domain containing protein, expressed
LOC_Os07g47240Os.37554.1.S1_at11/117+28231562..28232948expressed protein
LOC_Os07g47250Os.24995.1.S1_a_at11/117+28238772..28243716Lipase family protein, expressed
LOC_Os07g47260Os.32411.1.S1_at11/117+28245648..28248014expressed protein
LOC_Os07g47270Os.16760.1.S1_at11/117+28248349..28251962Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g47280Os.33702.1.S1_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47280Os.33702.1.S1_x_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0042156molecular_functionzinc-mediated transcriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37554.1.S1_at--1154--4491Chr07:28232196..28232220 (25 bp)
GCCGATGTCGATACCGATGCGGACT
LOC_Os07g47240
Os.37554.1.S1_at--258--6351Chr07:28232181..28232205 (25 bp)
GATGCGGACTCCTGATGCTGATCAT
LOC_Os07g47240
Os.37554.1.S1_at--126--631Chr07:28232167..28232191 (25 bp)
ATGCTGATCATCATCCCAGGGTTTC
LOC_Os07g47240
Os.37554.1.S1_at--155--4351Chr07:28232152..28232176 (25 bp)
CCAGGGTTTCTGCTATGCGTGATCA
LOC_Os07g47240
Os.37554.1.S1_at--902--8291Chr07:28232095..28232119 (25 bp)
GGCTTCGCTTGTATTCTAATGCTAA
LOC_Os07g47240
Os.37554.1.S1_at--636--3571Chr07:28232019..28232043 (25 bp)
CATACCGGTGTCAACATTGGCAAAT
LOC_Os07g47240
Os.37554.1.S1_at--675--8491Chr07:28231926..28231950 (25 bp)
TGGCTACCCACATTATGATCTCATC
LOC_Os07g47240
Os.37554.1.S1_at--961--7731Chr07:28231793..28231817 (25 bp)
GGTGTGTTACATACTCTTTTGCGAT
LOC_Os07g47240
Os.37554.1.S1_at--882--6311Chr07:28231756..28231780 (25 bp)
GATGACACAAGCTCGCAAATTGCCA
LOC_Os07g47240
Os.37554.1.S1_at--451--171Chr07:28231600..28231624 (25 bp)
ATTTATGATATTGTCGTCGGGCTAG
LOC_Os07g47240
Os.37554.1.S1_at--847--9991Chr07:28231578..28231602 (25 bp)
TAGCTCCGAGCCTATATATCAAGTG
LOC_Os07g47240
Target Sequence 
GCCGATGTCGATACCGATGCGGACTCCTGATGCTGATCATCATCCCAGGGTTTCTGCTATGCGTGATCAGCTTGATCTAA
TCGAAGAGGCCATGAGAAATAGGCTTCGCTTGTATTCTAATGCTAATGCTAATGCTAATGTTGGTTCTTCTTCTGCTACC
GCTGTTGCTACCACCACCATACCGGTGTCAACATTGGCAAATGGTGAGGGTTCAACTGGAAAAAGGTGTGGTTGCCGCCG
TTGTGTGGAGGAGGAAGACGCTTTGCTCAATGGCTACCCACATTATGATCTCATCATGGACTTGGTGGATGNATAGATGG
GTGTGTTACATACTCTTTTGCGATGCATTTGAAGGAGATGACACAAGCTCGCAAATTGCCAAAATGGAGAAACTTGAGCG
ATTTGGGATGCTTTAAAAGTTGACACCCTATACATATGGTGCTGGATCATGTATCATATTTATGCCAATTTTTACTAGAA
AAGTGTATGCGTGTGCATGCATATATAAAAATATTTATGATATTGTCGTCGGGCTAGCTCCGAGCCTATATATCAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis