Browse Element(s) Details


Os.24995.1.S1_a_at

Description gb:AK072772.1
DB_XREF= gi:32982795
TID=Os.24995.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative triacylglycerol lipase (P0625E02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136M13, full insert sequence.
FL= gb:AK072772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4725011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47210Os.51144.1.S1_at11/117+28220891..28223204GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g47220OsAffx.22523.1.S1_at11/117+28224076..28224486hypothetical protein
LOC_Os07g47230OsAffx.16746.1.S1_at11/117+28226876..28230131Protein kinase domain containing protein, expressed
LOC_Os07g47240Os.37554.1.S1_at11/117+28231562..28232948expressed protein
LOC_Os07g47250Os.24995.1.S1_a_at11/117+28238772..28243716Lipase family protein, expressed
LOC_Os07g47260Os.32411.1.S1_at11/117+28245648..28248014expressed protein
LOC_Os07g47270Os.16760.1.S1_at11/117+28248349..28251962Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g47280Os.33702.1.S1_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47280Os.33702.1.S1_x_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24995.1.S1_a_at--371--10711Chr07:28243067..28243180 (25 bp)
TTGCTGCAGGTGCATCTCCACATGG
LOC_Os07g47250
Os.24995.1.S1_a_at--469--5891Chr07:28243186..28243210 (25 bp)
GAGCGTTCAAGACCATTTCACATAC
LOC_Os07g47250
Os.24995.1.S1_a_at--811--5831Chr07:28243196..28243220 (25 bp)
GACCATTTCACATACCTGGGAGTTG
LOC_Os07g47250
Os.24995.1.S1_a_at--964--5391Chr07:28243226..28243250 (25 bp)
GAAGCTGACGACTGGAGCACTTGTA
LOC_Os07g47250
Os.24995.1.S1_a_at--761--5111Chr07:28243242..28243266 (25 bp)
GCACTTGTAGAATCATCACAGCTGA
LOC_Os07g47250
Os.24995.1.S1_a_at--447--9211Chr07:28243281..28243305 (25 bp)
TCCAAAAGGATCTCGCCAGCAACAT
LOC_Os07g47250
Os.24995.1.S1_a_at--71--2511Chr07:28243301..28243325 (25 bp)
AACATCATCGTCTCCAAGCACTCTG
LOC_Os07g47250
Os.24995.1.S1_a_at--697--2711Chr07:28243316..28243340 (25 bp)
AAGCACTCTGTCGATGTCACTATTG
LOC_Os07g47250
Os.24995.1.S1_a_at--514--7151Chr07:28243382..28243406 (25 bp)
GTCTACGGTATTTCTTTTATCCGAT
LOC_Os07g47250
Os.24995.1.S1_a_at--544--6371Chr07:28243422..28243446 (25 bp)
GATCCTTCCTCTTTTCTCGAAGATG
LOC_Os07g47250
Os.24995.1.S1_a_at--808--3131Chr07:28243655..28243679 (25 bp)
AATTATCTGTATCTGCCACTGTGTA
LOC_Os07g47250
Target Sequence 
TTGCTGCAGGTGCATCTCCACATGGAGTTTGAGCGTTCAAGACCATTTCACATACCTGGGAGTTGATATGGAAGCTGACG
ACTGGAGCACTTGTAGAATCATCACAGCTGAAAATGTTAGGCAACTCCAAAAGGATCTCGCCAGCAACATCATCGTCTCC
AAGCACTCTGTCGATGTCACTATTGTAGAACCTAGTTCACAAACATATTGAAAGCNATTATGGATAGTCTACGGTATTTC
TTTTATCCGATTTAGAGCNAAGGATGGATCCTTCCTCTTTTCTCGAAGATGAAGGCTTGATTAGAAATTCATTCNGATTT
GGATGTACATACAGGGTTCNTTTCATAGCTTGNGAATATGTAGAGATGTACATAGGATGATAGATTCATATTTCATAGGT
GTTAGTTTTTTATTTTTTCCTTTTCTGATGCATATGCTTATGCATTTTGTAAATGCAATAANNACNAGAATAGTTCCACC
CATGTATGAATATCCATACAATTATCTGTATCTGCCACTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24995.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis