Browse Element(s) Details


Os.32411.1.S1_at

Description gb:AK103292.1
DB_XREF= gi:32988501
TID=Os.32411.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome3, At3g05675 (P0625E02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125A06, full insert sequence.
FL= gb:AK103292.1 gb:AK105114.1 gb:AK063550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4726011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47210Os.51144.1.S1_at11/117+28220891..28223204GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g47220OsAffx.22523.1.S1_at11/117+28224076..28224486hypothetical protein
LOC_Os07g47230OsAffx.16746.1.S1_at11/117+28226876..28230131Protein kinase domain containing protein, expressed
LOC_Os07g47240Os.37554.1.S1_at11/117+28231562..28232948expressed protein
LOC_Os07g47250Os.24995.1.S1_a_at11/117+28238772..28243716Lipase family protein, expressed
LOC_Os07g47260Os.32411.1.S1_at11/117+28245648..28248014expressed protein
LOC_Os07g47270Os.16760.1.S1_at11/117+28248349..28251962Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g47280Os.33702.1.S1_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47280Os.33702.1.S1_x_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47290Os.11026.1.S1_at11/117+28270621..28274933Xylose isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32411.1.S1_at--673--3851Chr07:28247430..28247454 (25 bp)
CTGAATGCTGGGACGATGGCTCTTG
LOC_Os07g47260
Os.32411.1.S1_at--980--8031Chr07:28247454..28247478 (25 bp)
GGAGCATAACTTAGAACCTTTGGAC
LOC_Os07g47260
Os.32411.1.S1_at--938--6731Chr07:28247484..28247508 (25 bp)
GTTCATGTATGCTTGCACTCACAGA
LOC_Os07g47260
Os.32411.1.S1_at--652--5411Chr07:28247507..28247531 (25 bp)
GAAGCGGCTAATGTTTGCATGATCT
LOC_Os07g47260
Os.32411.1.S1_at--274--9531Chr07:28247578..28247602 (25 bp)
TCTAAGTTGTACAATCAGCCGGCCA
LOC_Os07g47260
Os.32411.1.S1_at--439--4371Chr07:28247600..28247624 (25 bp)
CCACATATATCTTCCTTTGCTACAT
LOC_Os07g47260
Os.32411.1.S1_at--438--551Chr07:28247645..28247669 (25 bp)
ATCCGCTCAGGATTTCAGCAGCTTA
LOC_Os07g47260
Os.32411.1.S1_at--493--1231Chr07:28247836..28247860 (25 bp)
AGTTCTGTCAGGCTTTGCATGGCAC
LOC_Os07g47260
Os.32411.1.S1_at--808--851Chr07:28247854..28247878 (25 bp)
ATGGCACCTGAAGACTTAGCTCCTT
LOC_Os07g47260
Os.32411.1.S1_at--373--2251Chr07:28247947..28247971 (25 bp)
AAATTAATCGCTGTTCTGTCTCTGG
LOC_Os07g47260
Os.32411.1.S1_at--1119--6711Chr07:28247959..28247983 (25 bp)
GTTCTGTCTCTGGTGTACATTGGCA
LOC_Os07g47260
Target Sequence 
CTGAATGCTGGGACGATGGCTCTTGGAGCATAACTTAGAACCTTTGGACAAATAGTTCATGTATGCTTGCACTCACAGAA
GCGGCTAATGTTTGCATGATCTAGCTTTGCAAGTCTTGAATTATCTACTTACAAGTTACTTGGAAGGTTCTAAGTTGTAC
AATCAGCCGGCCACATATATCTTCCTTTGCTACATGGTTCTTTAATAACCTGTTCATCCGCTCAGGATTTCAGCAGCTTA
TTGAAGTCTTCTTGAAGGAACCGAAGACTGTCCAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGG
AAGGAAAAAACAGTTGCTTTGGGAAGGACAAAGAGAGAGCTCTGGCAAAGCTCAAATGGCAACAGAAATGCCGAAGACTG
AACAAGAGTTCTGTCAGGCTTTGCATGGCACCTGAAGACTTAGCTCCTTTTTTTTTTTTTTGAGATGGTAGACTTACTTA
TACTATTTTGTAAACCATCTGAAACTGAACATGAGCACCAAATTAATCGCTGTTCTGTCTCTGGTGTACATTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis