Browse Element(s) Details


Os.11026.1.S1_at

Description gb:AK072249.1
DB_XREF= gi:32982272
TID=Os.11026.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.11026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative xylose isomerase (P0625E02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001E09, full insert sequence.
FL= gb:AK104085.1 gb:AK072249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4729011/11Xylose isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47260Os.32411.1.S1_at11/117+28245648..28248014expressed protein
LOC_Os07g47270Os.16760.1.S1_at11/117+28248349..28251962Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g47280Os.33702.1.S1_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47280Os.33702.1.S1_x_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47290Os.11026.1.S1_at11/117+28270621..28274933Xylose isomerase, putative, expressed
LOC_Os07g47300Os.9678.1.S1_at11/117+28275827..28279366GTP1/OBG family protein, putative, expressed
LOC_Os07g47310OsAffx.16747.1.S1_at10/117+28281177..28284162hypothetical protein
LOC_Os07g47310Os.46481.2.S1_x_at1/117+28281177..28284162hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_x_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.2.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.1.S1_x_at10/117+28288084..28295650hypothetical protein
LOC_Os07g47330Os.32291.1.S1_at11/117+28297909..28299396branched silkless1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0009045molecular_functionxylose isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11026.1.S1_at--759--8291Chr07:28271565..28271589 (25 bp)
GGCTTGCACCTGGTGGATTCAACTT
LOC_Os07g47290
Os.11026.1.S1_at--1047--4691Chr07:28271360..28271384 (25 bp)
GCGGCCTTCGGAATGTTGTCAAGCT
LOC_Os07g47290
Os.11026.1.S1_at--277--4751Chr07:28271260..28271362 (25 bp)
GCTGATCGAGGATGGTTCCCTGGAT
LOC_Os07g47290
Os.11026.1.S1_at--946--8791Chr07:28271230..28271254 (25 bp)
TGTTCGCAAGCGCTACCAGAGTTTT
LOC_Os07g47290
Os.11026.1.S1_at--1089--7351Chr07:28271039..28271063 (25 bp)
GTGAACCCATTGTTCCATCTGGCAA
LOC_Os07g47290
Os.11026.1.S1_at--526--2571Chr07:28270901..28270925 (25 bp)
AACTGGCTGAGATTCTGTTCCAAGC
LOC_Os07g47290
Os.11026.1.S1_at--247--3251Chr07:28270881..28270905 (25 bp)
CAAGCTGCTCTATAGATGGTGCCGT
LOC_Os07g47290
Os.11026.1.S1_at--750--4431Chr07:28270829..28270853 (25 bp)
GCCTAGCACGCCTTTGGAAACGGAA
LOC_Os07g47290
Os.11026.1.S1_at--564--7331Chr07:28270803..28270827 (25 bp)
GTGCATTCTATCATTGTCTACTACG
LOC_Os07g47290
Os.11026.1.S1_at--532--10051Chr07:28270757..28270781 (25 bp)
TAGTTATTAGCCTTCCATGCAATGA
LOC_Os07g47290
Os.11026.1.S1_at--626--2991Chr07:28270701..28270725 (25 bp)
AATGATGAGTTGTGCCTTTCTAAAC
LOC_Os07g47290
Target Sequence 
GGCTTGCACCTGGTGGATTCAACTTTGATGCCAAATTGAGGAGGGAGAGTACTGATGTTGAGGACATGTTTCTGGCTCAT
ATATCGGGAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGGATGGTTCCCTGGATGAGCTTGT
TCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGGCTGGGAAAGGAGACTTCGAGACACTAGAGA
AGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAGGAACTGGCTGAGATTCTGTTCCAAGCTGCTCTA
TAGATGGTGCCGTGGTGCTGTTCATAGTTCTAGGAATAAAGCCTAGCACGCCTTTGGAAACGGAATGTGCATTCTATCAT
TGTCTACTACGAGCAATAATCTAGTTATAGTTTAGTTATTAGCCTTCCATGCAATGAACTTTTGTACACTACAGCATGGA
ACTTAAATAATGATGAGTTGTGCCTTTCTAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis