Browse Element(s) Details


Os.32291.1.S1_at

Description gb:AK105365.1
DB_XREF= gi:32990574
TID=Os.32291.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) AP2 domain -like protein (P0625E02.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F02, full insert sequence.
FL= gb:AK105365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4733011/11branched silkless1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47290Os.11026.1.S1_at11/117+28270621..28274933Xylose isomerase, putative, expressed
LOC_Os07g47300Os.9678.1.S1_at11/117+28275827..28279366GTP1/OBG family protein, putative, expressed
LOC_Os07g47310OsAffx.16747.1.S1_at10/117+28281177..28284162hypothetical protein
LOC_Os07g47310Os.46481.2.S1_x_at1/117+28281177..28284162hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_x_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.2.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.1.S1_x_at10/117+28288084..28295650hypothetical protein
LOC_Os07g47330Os.32291.1.S1_at11/117+28297909..28299396branched silkless1, putative, expressed
LOC_Os07g47340Os.14765.1.S1_at11/117+28306752..28309888expressed protein
LOC_Os07g47350Os.15701.2.S1_at11/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47350Os.15701.1.S1_x_at10/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32291.1.S1_at--86--4331Chr07:28298307..28298331 (25 bp)
CCATTGATCGAGTTGCACCGGGCAT
LOC_Os07g47330
Os.32291.1.S1_at--95--5091Chr07:28298293..28298317 (25 bp)
GCACCGGGCATTGCATGGCTAATCA
LOC_Os07g47330
Os.32291.1.S1_at--654--8311Chr07:28298277..28298301 (25 bp)
GGCTAATCACGCACTTTGCCTCTGA
LOC_Os07g47330
Os.32291.1.S1_at--5--10711Chr07:28298262..28298286 (25 bp)
TTGCCTCTGAGCGATCATGCATATA
LOC_Os07g47330
Os.32291.1.S1_at--760--4951Chr07:28298244..28298268 (25 bp)
GCATATATCATTTCCTGTCTACCAT
LOC_Os07g47330
Os.32291.1.S1_at--404--9271Chr07:28298232..28298256 (25 bp)
TCCTGTCTACCATGATCAGATCGAG
LOC_Os07g47330
Os.32291.1.S1_at--695--6391Chr07:28298168..28298192 (25 bp)
GATCGAGTAGTATAGCAGCAGCAGC
LOC_Os07g47330
Os.32291.1.S1_at--534--4931Chr07:28298108..28298132 (25 bp)
GCTTGGCGCCATTTCTAGTTAATTA
LOC_Os07g47330
Os.32291.1.S1_at--454--2051Chr07:28298061..28298085 (25 bp)
ACTTAGGCAGATGATCTCTCTCTCT
LOC_Os07g47330
Os.32291.1.S1_at--141--4951Chr07:28297995..28298019 (25 bp)
GCATTAGTACCTACTTAGCCATCAT
LOC_Os07g47330
Os.32291.1.S1_at--98--8251Chr07:28297940..28297964 (25 bp)
GGCACAGCTTGTTAATTTCTTCTAG
LOC_Os07g47330
Target Sequence 
CCATTGATCGAGTTGCACCGGGCATTGCATGGCTAATCACGCACTTTGCCTCTGAGCGATCATGCATATATCATTTCCTG
TCTACCATGATCAGATCGAGTTGATCTTGATCAATCTGCGTTTGATCGATCGAGCAAGAGATCGAGTAGTATAGCAGCAG
CAGCAGCAGCAGCTAGCAGTAGATCGAACAAGAAGAGTGGCTTGGCGCCATTTCTAGTTAATTAAGTAGAGCTTCTTCAA
ATATGTACTTAGGCAGATGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTATATTAGCATTAGTAC
CTACTTAGCCATCATATTCATGCATGCATGCATGATATATTGCATGGCACAGCTTGTTAATTTCTTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis