Browse Element(s) Details


OsAffx.1516.1.S1_x_at

Description gb:NM_186116.1
DB_XREF= gi:34899317
GEN=P0625E02.23
TID=OsAffx.1516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0625E02.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4732011/11hypothetical protein
LOC_Os05g061801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47290Os.11026.1.S1_at11/117+28270621..28274933Xylose isomerase, putative, expressed
LOC_Os07g47300Os.9678.1.S1_at11/117+28275827..28279366GTP1/OBG family protein, putative, expressed
LOC_Os07g47310OsAffx.16747.1.S1_at10/117+28281177..28284162hypothetical protein
LOC_Os07g47310Os.46481.2.S1_x_at1/117+28281177..28284162hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_x_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.2.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.1.S1_x_at10/117+28288084..28295650hypothetical protein
LOC_Os07g47330Os.32291.1.S1_at11/117+28297909..28299396branched silkless1, putative, expressed
LOC_Os07g47340Os.14765.1.S1_at11/117+28306752..28309888expressed protein
LOC_Os07g47350Os.15701.2.S1_at11/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47350Os.15701.1.S1_x_at10/117+28310518..28315977Potassium transporter 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1516.1.S1_x_at--802--19512Chr12:19359920..19359944 (25 bp)
ACTGGGCTGGATATGGGCTCGAAAA
NONE
OsAffx.1516.1.S1_x_at--921--251Chr07:28290560..28290584 (25 bp)
ATATGGGCTCGAAAATATTTGGACG
LOC_Os07g47320
OsAffx.1516.1.S1_x_at--179--10192Chr12:20734409..20734429 (21 bp)
TATTTGGACGAAATTACCCCTCGCT
NONE
OsAffx.1516.1.S1_x_at--918--1310Chr12:20734417..20734522 (25 bp)
ATTACCCCTCGCTAATGAAGCACAT
NONE
OsAffx.1516.1.S1_x_at--499--9351Chr07:28290595..28290702 (25 bp)
TCGCTAATGAAGCACATCTCTCTAT
LOC_Os07g47320
OsAffx.1516.1.S1_x_at--467--5391Chr07:28290686..28290710 (25 bp)
GAAGCACATCTCTCTATTGTTCTAA
LOC_Os07g47320
OsAffx.1516.1.S1_x_at--910--5111Chr07:28290689..28290713 (25 bp)
GCACATCTCTCTATTGTTCTAATCA
LOC_Os07g47320
OsAffx.1516.1.S1_x_at--716--8791Chr07:28290703..28290727 (25 bp)
TGTTCTAATCATTGTCACCACTCAC
LOC_Os07g47320
OsAffx.1516.1.S1_x_at--882--9671Chr07:28290724..28290748 (25 bp)
TCACCATCTGCCTATTGCTTTATCT
LOC_Os07g47320
OsAffx.1516.1.S1_x_at--491--471Chr07:28290729..28290753 (25 bp)
ATCTGCCTATTGCTTTATCTCCAAT
LOC_Os07g47320
OsAffx.1516.1.S1_x_at--201--10231Chr07:28290736..28290760 (25 bp)
TATTGCTTTATCTCCAATAGAGAAC
LOC_Os07g47320
Target Sequence 
ACTGGGCTGGATATGGGCTCGAAAATATTTGGACGAAATTACCCCTCGCTAATGAAGCACATCTCTCTATTGTTCTAATC
ATTGTCACCACTCACCATCTGCCTATTGCTTTATCTCCAATAGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1516.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis