Browse Element(s) Details


Os.9678.1.S1_at

Description gb:CA760044
DB_XREF= gi:25804083
DB_XREF=BR060002B10E06.ab1
CLONE=BR060002B10E06.ab1
TID=Os.9678.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.9678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein obg (P0625E02.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4730011/11GTP1/OBG family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47270Os.16760.1.S1_at11/117+28248349..28251962Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g47280Os.33702.1.S1_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47280Os.33702.1.S1_x_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47290Os.11026.1.S1_at11/117+28270621..28274933Xylose isomerase, putative, expressed
LOC_Os07g47300Os.9678.1.S1_at11/117+28275827..28279366GTP1/OBG family protein, putative, expressed
LOC_Os07g47310OsAffx.16747.1.S1_at10/117+28281177..28284162hypothetical protein
LOC_Os07g47310Os.46481.2.S1_x_at1/117+28281177..28284162hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_x_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.2.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.1.S1_x_at10/117+28288084..28295650hypothetical protein
LOC_Os07g47330Os.32291.1.S1_at11/117+28297909..28299396branched silkless1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9678.1.S1_at--549--3731Chr07:28278527..28278708 (25 bp)
CTAATTGGCAGTATTCAGAATCCTT
LOC_Os07g47300
Os.9678.1.S1_at--103--4891Chr07:28278725..28278749 (25 bp)
GCTTTAGAGGCATGTGGTGTCAACA
LOC_Os07g47300
Os.9678.1.S1_at--249--6311Chr07:28278907..28278931 (25 bp)
GATGAGCCTAGTAAGACCAGGTCAT
LOC_Os07g47300
Os.9678.1.S1_at--721--6311Chr07:28278952..28278976 (25 bp)
GATGACTCTGTCAGATGGCCTGAAT
LOC_Os07g47300
Os.9678.1.S1_at--787--5211Chr07:28278973..28278997 (25 bp)
GAATTTGGCTAGATCAAGGCTCAAG
LOC_Os07g47300
Os.9678.1.S1_at--744--9711Chr07:28278993..28279017 (25 bp)
TCAAGCAATGGTTCTGTGTCGCAGC
LOC_Os07g47300
Os.9678.1.S1_at--108--5591Chr07:28279034..28279058 (25 bp)
GAAATGTTTGCACATGCTTACAATA
LOC_Os07g47300
Os.9678.1.S1_at--725--3551Chr07:28279094..28279118 (25 bp)
CATCACAACAGCTAGTTACACCCAG
LOC_Os07g47300
Os.9678.1.S1_at--333--10051Chr07:28279106..28279130 (25 bp)
TAGTTACACCCAGCCCAAATAAAAG
LOC_Os07g47300
Os.9678.1.S1_at--765--9891Chr07:28279134..28279158 (25 bp)
TACTATTTTGTGTTACCTTCAGAAT
LOC_Os07g47300
Os.9678.1.S1_at--700--6111Chr07:28279211..28279235 (25 bp)
GAGTGCTATGTACTACCTTTTGTGA
LOC_Os07g47300
Target Sequence 
CTAATTGGCAGTATTCAGAATCCTTGAAACGATTTCAGCATGCTTTAGAGGCATGTGGTGTCAACAAAACTCTAATCAAA
CGTGGAGTTAAAGAGGGAGACACGGTAGTTGTTGGTGAGATGGAAATGGTTTGGACAGATGAGCCTAGTAAGACCAGGTC
ATCAAAGACAATGAACTCAAAAGATGACTCTGTCAGATGGCCTGAATTTGGCTAGATCAAGGCTCAAGCAATGGTTCTGT
GTCGCAGCNAGAGGCGATTTTCACTGAAATGTTTGCACATGCTTACAATAAANTGCTGCACTATGACAACAAAAAAACTA
CTAGTCATCACAACAGCTAGTTACACCCAGCCCAAATAAAAGGAATACTATTTTGTGTTACCTTCAGAATAGTGATGTAT
CACACAGNTTNGCCTACATGCTTTGAAAGTTGGATTATGCAGGAGTGCTATGTACTACCTTTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis