Browse Element(s) Details


OsAffx.16747.1.S1_at

Description tigr:9635.m04768
TID=OsAffx.16747.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4731010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47280Os.33702.1.S1_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47280Os.33702.1.S1_x_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47290Os.11026.1.S1_at11/117+28270621..28274933Xylose isomerase, putative, expressed
LOC_Os07g47300Os.9678.1.S1_at11/117+28275827..28279366GTP1/OBG family protein, putative, expressed
LOC_Os07g47310OsAffx.16747.1.S1_at10/117+28281177..28284162hypothetical protein
LOC_Os07g47310Os.46481.2.S1_x_at1/117+28281177..28284162hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_x_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.2.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.1.S1_x_at10/117+28288084..28295650hypothetical protein
LOC_Os07g47330Os.32291.1.S1_at11/117+28297909..28299396branched silkless1, putative, expressed
LOC_Os07g47340Os.14765.1.S1_at11/117+28306752..28309888expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16747.1.S1_at--109--1511Chr07:28281460..28281484 (25 bp)
AGCACTACCGTGAAATCATCTCCAT
LOC_Os07g47310
OsAffx.16747.1.S1_at--836--8871Chr07:28281488..28281631 (25 bp)
TGATGGTTGTCTGTACGCTGAGGCC
LOC_Os07g47310
OsAffx.16747.1.S1_at--922--591Chr07:28281652..28281676 (25 bp)
ATGCCTGGCAGCAAAGGATGCTCTC
LOC_Os07g47310
OsAffx.16747.1.S1_at--138--7131Chr07:28281677..28281697 (21 bp)
GTCATGGCTTCTCGTGTCATGCATA
LOC_Os07g47310
OsAffx.16747.1.S1_at--519--7451NONE
GTGTCATGCATACTGCGGAGCTCAA
NONE
OsAffx.16747.1.S1_at--354--3951Chr07:28283672..28283696 (25 bp)
CGGACGACTCGTACGATCGGAAGGT
LOC_Os07g47310
OsAffx.16747.1.S1_at--343--7751Chr07:28283748..28283772 (25 bp)
GGTGACCCACGTCTTGCTGGACGAC
LOC_Os07g47310
OsAffx.16747.1.S1_at--931--2651Chr07:28283842..28283866 (25 bp)
AAGCCCTTGTACGACGACTTCCAGG
LOC_Os07g47310
OsAffx.16747.1.S1_at--1048--1291Chr07:28283870..28283894 (25 bp)
AGATGAACACGCTCGTCCACAAGAT
LOC_Os07g47310
OsAffx.16747.1.S1_at--455--5611Chr07:28283896..28283920 (25 bp)
GACAAGGCCTTGGATCCACACATAT
LOC_Os07g47310
OsAffx.16747.1.S1_at--149--8131Chr07:28284085..28284109 (25 bp)
GGACTCATGGTGTCTCGTCGGAAGA
LOC_Os07g47310
Target Sequence 
AGCACTACCGTGAAATCATCTCCATAGATGATGGTTGTCTGTACGCTGAGGCCACGGAGAAGTCGGCGGGGGTATGCCTG
GCAGCAAAGGATGCTCTCGTCATGGCTTCTCGTGTCATGCATACTGCGGAGCTCAATCTCGCTGCGCCAAACGAAACATC
TACAGAAACAGTCCACAGGACTGTGAGGATGTACGTGAACATCGTGATGGCGGCCGCGGACGACTCGTACGATCGGAAGG
TGAGCAAGAAGACGGTGGAGTCGTACCTGCGAGCGCTGCGAGGCCTCGCGGCGGTGACCCACGTCTTGCTGGACGACGCC
CTGGAAGCCGTCAGCCACAGGGCGCCCATGGATAGCCTCGCCGAGTACGCCTTCAACTCCGACGTCAAGCCCTTGTACGA
CGACTTCCAGGCCGAGATGAACACGCTCGTCCACAAGATCGACAAGGCCTTGGATCCACACATATGCAGGATTGCAGTGT
GGGTAATGGCGAGGGCAACGCAGATTACTGGGACAATTATTGGACTCATGGTGTCTCGTCGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis