Browse Element(s) Details


Os.14765.1.S1_at

Description gb:AK066595.1
DB_XREF= gi:32976613
TID=Os.14765.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU085808(C53711)~hypothetical protein~similar to Arabidopsis thaliana chromosome5, At5g18540 (P0625E02.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072A15, full insert sequence.
FL= gb:AK066595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4734011/11expressed protein
LOC_Os12g159501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47310OsAffx.16747.1.S1_at10/117+28281177..28284162hypothetical protein
LOC_Os07g47310Os.46481.2.S1_x_at1/117+28281177..28284162hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_x_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.1516.1.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.2.S1_at11/117+28288084..28295650hypothetical protein
LOC_Os07g47320OsAffx.28941.1.S1_x_at10/117+28288084..28295650hypothetical protein
LOC_Os07g47330Os.32291.1.S1_at11/117+28297909..28299396branched silkless1, putative, expressed
LOC_Os07g47340Os.14765.1.S1_at11/117+28306752..28309888expressed protein
LOC_Os07g47350Os.15701.2.S1_at11/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47350Os.15701.1.S1_x_at10/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47370Os.30015.1.S1_at11/117+28333682..28335904pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14765.1.S1_at--881--1171Chr07:28307758..28307782 (25 bp)
AGTACGGCACGTTTCATCATTCGGA
LOC_Os07g47340
Os.14765.1.S1_at--1093--3551Chr07:28307745..28307768 (24 bp)
CATCATTCGGAGATTCTTCTGAGGA
LOC_Os07g47340
Os.14765.1.S1_at--505--2951Chr07:28307037..28307061 (25 bp)
AAGGCGTTGCTGTTGTCATTTTTCT
LOC_Os07g47340
Os.14765.1.S1_at--388--7391Chr07:28306997..28307021 (25 bp)
GTGAGTCCCATTTCTTGTAAGCATT
LOC_Os07g47340
Os.14765.1.S1_at--379--31Chr07:28306975..28306999 (25 bp)
ATTGTAAGCACTTGCTCTTCCTGGC
LOC_Os07g47340
Os.14765.1.S1_at--197--8531Chr07:28306940..28306964 (25 bp)
TGGAAATCCCATTTGCGGGCTGCAT
LOC_Os07g47340
Os.14765.1.S1_at--861--7571Chr07:28306924..28306948 (25 bp)
GGGCTGCATGCCTGTCACATGATGA
LOC_Os07g47340
Os.14765.1.S1_at--877--7091Chr07:28306911..28306935 (25 bp)
GTCACATGATGACCGGAAGCCACAT
LOC_Os07g47340
Os.14765.1.S1_at--582--931Chr07:28306876..28306900 (25 bp)
AGGCAAGACCTCAAGACTAGCACTT
LOC_Os07g47340
Os.14765.1.S1_at--554--2372Chr12:9087054..9087164 (25 bp)
AAACCTGTGAAATCCAGTGCTGCAA
LOC_Os12g15950
Os.14765.1.S1_at--605--1971Chr07:28306799..28306823 (25 bp)
ACTGAATTATGGGTGCTGGCTTGCT
LOC_Os07g47340
Target Sequence 
AGTACGGCACGTTTCATCATTCGGAGATTCTTCTGAGGATTCTGATGATTCAAAAGATGGAGAAGAAACCAAGGGGGTCA
AAAGAAAAAGGAAGAATAAGNNNNNTANNNGNTTTCAAAACNGGAGGAGAACAGAGCAAGAAAAAGAAGAAAAATAAAAA
GAAAAATCNTAAAGGCTGCTAAAGATNTCCANAGTCCCNANAAAGCATCGAAGAAGAAAAAGTTNGAAANTCCCTATGAT
TNCTTTNAACTTCTCTGGTATTNAGGGAGCTGAAGGCGTTGCTGTTGTCATTTTTCTTGATTTCACTTTTTTGTGAGTCC
CATTTCTTGTAAGCATTGTAAGCACTTGCTCTTCCTGGCATTTTGACACTGGAAATCCCATTTGCGGGCTGCATGCCTGT
CACATGATGACCGGAAGCCACATTTNNTCGAGAGAGGCAAGACCTCAAGACTAGCACTTGTATACAATTTACAGTGAACA
ATACAAAACCTGTGAAATCCAGTGCTGCAAAACTGAATTATGGGTGCTGGCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis