Browse Element(s) Details


Os.30015.1.S1_at

Description gb:AK109518.1
DB_XREF= gi:32994727
TID=Os.30015.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.30015 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to selenium-binding protein (P0625E02.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B01, full insert sequence.
FL= gb:AK109518.1 gb:AK102790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4737011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47340Os.14765.1.S1_at11/117+28306752..28309888expressed protein
LOC_Os07g47350Os.15701.2.S1_at11/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47350Os.15701.1.S1_x_at10/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47370Os.30015.1.S1_at11/117+28333682..28335904pentatricopeptide, putative, expressed
LOC_Os07g47380OsAffx.28942.1.S1_at10/117+28336051..28337494expressed protein
LOC_Os07g47390OsAffx.16748.1.S1_at11/117+28338018..28338716C2 domain containing protein, expressed
LOC_Os07g47400Os.26494.1.S1_at11/117+28342440..28343698C2 domain containing protein, expressed
LOC_Os07g47410OsAffx.22521.2.S1_x_at11/117+28344918..28348166hypothetical protein
LOC_Os07g47410OsAffx.22521.1.S1_x_at10/117+28344918..28348166hypothetical protein
LOC_Os07g47420Os.18416.1.S1_at11/117+28350881..2835306660S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30015.1.S1_at--533--4471Chr07:28334216..28334240 (25 bp)
GCCGGCAGGGACATCTTCGACTCGA
LOC_Os07g47370
Os.30015.1.S1_at--1073--4091Chr07:28334199..28334223 (25 bp)
CGACTCGATGGCTGCCGATCGCGGC
LOC_Os07g47370
Os.30015.1.S1_at--925--1611Chr07:28334170..28334194 (25 bp)
AGCTGTGGCCGGAGCACTACTCCTG
LOC_Os07g47370
Os.30015.1.S1_at--43--7211Chr07:28334144..28334168 (25 bp)
GTCGTCGACATGTTAGGCCGGGCAG
LOC_Os07g47370
Os.30015.1.S1_at--399--1371Chr07:28334053..28334077 (25 bp)
AGAGCTTGCTCGGAGCCTGCAGAAT
LOC_Os07g47370
Os.30015.1.S1_at--56--9051Chr07:28334036..28334060 (25 bp)
TGCAGAATCCATGGCGACGCGGAGA
LOC_Os07g47370
Os.30015.1.S1_at--635--8391Chr07:28333961..28333985 (25 bp)
GGCGCGTACGTCCTCCTGTCGAACA
LOC_Os07g47370
Os.30015.1.S1_at--343--2091Chr07:28333939..28333963 (25 bp)
ACATCTACGCCGACGTGGGCGACTG
LOC_Os07g47370
Os.30015.1.S1_at--855--10251Chr07:28333815..28333839 (25 bp)
TTTGCACAAGTTTTCGTCGGACGAC
LOC_Os07g47370
Os.30015.1.S1_at--762--5791Chr07:28333788..28333812 (25 bp)
GACGCATCCGCGTACAGAAGAGATA
LOC_Os07g47370
Os.30015.1.S1_at--1160--1251Chr07:28333768..28333792 (25 bp)
AGATATACGCAGTGGCCGATGTGTT
LOC_Os07g47370
Target Sequence 
GCCGGCAGGGACATCTTCGACTCGATGGCTGCCGATCGCGGCGTCGAGCTGTGGCCGGAGCACTACTCCTGCGTCGTCGA
CATGTTAGGCCGGGCAGGGAGGCTGGCGGAGGCTGAGGAGCTCATGATGCGGATGCCGGCGGGGCCGAGCGTGTCGGCGC
TGCAGAGCTTGCTCGGAGCCTGCAGAATCCATGGCGACGCGGAGATCGGCGAGAGGNTCGCCAGAATTTTGACGGAGAAG
GAGCCGACGGAGTCCGGCGCGTACGTCCTCCTGTCGAACATCTACGCCGACGTGGGCGACTGGGACGGCGTCGCCAAGGT
GAGGAGGAAGATGAGGGACAGAGGCGTCAAGAAGGAGATCGGGTTCAGCTGGGTGGACGCCGGCGCTGGCGAGGCACTGC
ATTTGCACAAGTTTTCGTCGGACGACACGACGCATCCGCGTACAGAAGAGATATACGCAGTGGCCGATGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis