Browse Element(s) Details


Os.11884.1.S1_s_at

Description gb:AK062892.1
DB_XREF= gi:32972910
TID=Os.11884.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E05, full insert sequence.
FL= gb:AK062892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4736011/11CW-type Zinc Finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47330Os.32291.1.S1_at11/117+28297909..28299396branched silkless1, putative, expressed
LOC_Os07g47340Os.14765.1.S1_at11/117+28306752..28309888expressed protein
LOC_Os07g47350Os.15701.2.S1_at11/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47350Os.15701.1.S1_x_at10/117+28310518..28315977Potassium transporter 7, putative, expressed
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47370Os.30015.1.S1_at11/117+28333682..28335904pentatricopeptide, putative, expressed
LOC_Os07g47380OsAffx.28942.1.S1_at10/117+28336051..28337494expressed protein
LOC_Os07g47390OsAffx.16748.1.S1_at11/117+28338018..28338716C2 domain containing protein, expressed
LOC_Os07g47400Os.26494.1.S1_at11/117+28342440..28343698C2 domain containing protein, expressed
LOC_Os07g47410OsAffx.22521.2.S1_x_at11/117+28344918..28348166hypothetical protein
LOC_Os07g47410OsAffx.22521.1.S1_x_at10/117+28344918..28348166hypothetical protein
LOC_Os07g47420Os.18416.1.S1_at11/117+28350881..2835306660S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11884.1.S1_s_at--682--6931Chr07:28332265..28332289 (25 bp)
GTAGATAATCTTCTTTCCTCCATGC
LOC_Os07g47360
Os.11884.1.S1_s_at--684--7711Chr07:28332366..28332390 (25 bp)
GGTGGTTTCCACTTAGCAATTTTGA
LOC_Os07g47360
Os.11884.1.S1_s_at--909--391Chr07:28332514..28332538 (25 bp)
ATCAGCCAGTGGTGTCTCTTTTTCA
LOC_Os07g47360
Os.11884.1.S1_s_at--582--271Chr07:28333077..28333101 (25 bp)
ATAGGCTAACTCGTTCCTTGACTAT
LOC_Os07g47360
Os.11884.1.S1_s_at--461--6691Chr07:28333089..28333113 (25 bp)
GTTCCTTGACTATCAGTACGACGAC
LOC_Os07g47360
Os.11884.1.S1_s_at--107--9791Chr07:28333116..28333140 (25 bp)
TAACCAGCGCGTGTACATGTATATA
LOC_Os07g47360
Os.11884.1.S1_s_at--833--311Chr07:28333140..28333164 (25 bp)
ATACCCGAATGGTCGAAGCGTTTGT
LOC_Os07g47360
Os.11884.1.S1_s_at--669--2671Chr07:28333155..28333179 (25 bp)
AAGCGTTTGTCTTGCGTGCTGGTAC
LOC_Os07g47360
Os.11884.1.S1_s_at--181--4731Chr07:28333172..28333196 (25 bp)
GCTGGTACACTCGTGACACCAATGT
LOC_Os07g47360
Os.11884.1.S1_s_at--746--351Chr07:28333301..28333325 (25 bp)
ATAAGCTCTGTATTCTGTACTGTTT
LOC_Os07g47360
Os.11884.1.S1_s_at--771--4591Chr07:28333331..28333355 (25 bp)
GCGAATCGCATCTTCAGTTCAGTTG
LOC_Os07g47360
Target Sequence 
GTAGATAATCTTCTTTCCTCCATGCTGTAAATGATGTATTTTCGTCATGGAGTTGACTTATGGTTGAATAGTATCATATG
TTCCTTTGAGAAGGGCAAAATGGTGGTTTCCACTTAGCAATTTTGATGCAGGTCAGAGGACAAAAGTGTTAATTAGTGTG
CTAACCAAGAAATCAGCCAGTGGTGTCTCTTTTTCAGTGCCACTTCTGGATAAAGTTCAAGCAGATTTCAAACAAGAAAT
CACTTGGACCATCACATGTGTATGAACAATGTACAAAGATTTTCATGTACAATAGGCTAACTCGTTCCTTGACTATCAGT
ACGACGACTATAACCAGCGCGTGTACATGTATATATACCCGAATGGTCGAAGCGTTTGTCTTGCGTGCTGGTACACTCGT
GACACCAATGTACTTTTAGTCCACATTTTTCTTCTGGCAAATTTTGTTAGTTTCACATTAGTCGTTGAGATGTGATAGAA
CTTATCTGGACTGAGAATGTGTTGCAGAATGCAAAATAAGCTCTGTATTCTGTACTGTTTGTATCGCGAATCGCATCTTC
AGTTCAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11884.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis