Browse Element(s) Details


Os.18416.1.S1_at

Description gb:AK102921.1
DB_XREF= gi:32988130
TID=Os.18416.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114C10, full insert sequence.
FL= gb:AK102921.1 gb:AK060349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4742011/1160S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47370Os.30015.1.S1_at11/117+28333682..28335904pentatricopeptide, putative, expressed
LOC_Os07g47380OsAffx.28942.1.S1_at10/117+28336051..28337494expressed protein
LOC_Os07g47390OsAffx.16748.1.S1_at11/117+28338018..28338716C2 domain containing protein, expressed
LOC_Os07g47400Os.26494.1.S1_at11/117+28342440..28343698C2 domain containing protein, expressed
LOC_Os07g47410OsAffx.22521.2.S1_x_at11/117+28344918..28348166hypothetical protein
LOC_Os07g47410OsAffx.22521.1.S1_x_at10/117+28344918..28348166hypothetical protein
LOC_Os07g47420Os.18416.1.S1_at11/117+28350881..2835306660S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein
LOC_Os07g47440OsAffx.26548.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47440OsAffx.25036.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47450NANA7+28366202..28366653flowering promoting factor-like 1, putative, expressed
LOC_Os07g47460OsAffx.16750.1.S1_at11/117+28370141..28371194expressed protein
LOC_Os07g47470OsAffx.16751.1.S1_at11/117+28371675..28373330Rf1 protein, mitochondrial precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0042254biological_processribosome biogenesis and assembly
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18416.1.S1_at--1156--951Chr07:28351423..28351447 (25 bp)
AGGACTGCAGGAAGGCCGACACCAA
LOC_Os07g47420
Os.18416.1.S1_at--908--9031Chr07:28351462..28351486 (25 bp)
TGCACCAGTCTGACGCAGGCGAGTA
LOC_Os07g47420
Os.18416.1.S1_at--855--3311Chr07:28352786..28352810 (25 bp)
CACATTGGCGTGACTGCAGGACTGA
LOC_Os07g47420
Os.18416.1.S1_at--961--951Chr07:28352803..28352827 (25 bp)
AGGACTGAAGGATGCGCTTCCTCTT
LOC_Os07g47420
Os.18416.1.S1_at--853--4911Chr07:28352818..28352842 (25 bp)
GCTTCCTCTTCATGCGATAATTCGA
LOC_Os07g47420
Os.18416.1.S1_at--792--9551Chr07:28352835..28352859 (25 bp)
TAATTCGAAGTTTTTCTACCACCAG
LOC_Os07g47420
Os.18416.1.S1_at--189--8031Chr07:28352894..28352918 (25 bp)
GGAGGTCTGTTGTATCATCTATCTA
LOC_Os07g47420
Os.18416.1.S1_at--139--2251Chr07:28352925..28352949 (25 bp)
AAATTTTGTTCCCAGGCTGTTCTAT
LOC_Os07g47420
Os.18416.1.S1_at--862--10411Chr07:28352980..28353004 (25 bp)
TTATCGGTAAGCTACTGCATGACTG
LOC_Os07g47420
Os.18416.1.S1_at--172--3531Chr07:28352997..28353021 (25 bp)
CATGACTGAATGCTGCAGGCCTGCA
LOC_Os07g47420
Os.18416.1.S1_at--305--3491Chr07:28353012..28353036 (25 bp)
CAGGCCTGCAGTAACATTTGATCGT
LOC_Os07g47420
Target Sequence 
AGGACTGCAGGAAGGCCGACACCAACGCCGTCGTTGTGCTGCACCAGTCTGACGCAGGCGAGTACCTCCGCCGGGAGGAG
GAGCTCATGTGAGGTGTTGAGGTTTGACACATTGGCGTGACTGCAGGACTGAAGGATGCGCTTCCTCTTCATGCGATAAT
TCGAAGTTTTTCTACCACCAGTAAATGTGCGATTTTTACCTAGTTTTAAGATAGTGGAGGTCTGTTGTATCATCTATCTA
GTAGAAAAATTTTGTTCCCAGGCTGTTCTATGGGCCTAAAAGTGTTCTGTTAAGCNGTAACTTATCGGTAAGCTACTGCA
TGACTGAATGCTGCAGGCCTGCAGTAACATTTGATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis