Browse Element(s) Details


OsAffx.26548.1.S1_at

Description tigr:9632.m04880
TID=OsAffx.26548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5018811/11hypothetical protein
LOC_Os07g474406/11retrotransposon protein, putative, unclassified
LOC_Os03g102806/11retrotransposon protein, putative, unclassified
LOC_Os04g068703/11retrotransposon protein, putative, unclassified
LOC_Os06g087003/11retrotransposon protein, putative, unclassified
LOC_Os02g501743/11Caleosin related protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50164NANA4+29708228..29709802retrotransposon protein, putative, unclassified
LOC_Os04g50168NANA4+29711954..29713625retrotransposon protein, putative, unclassified
LOC_Os04g50172Os.27544.1.A1_at4/114+29714175..29718815retrotransposon protein, putative, unclassified
LOC_Os04g50172OsAffx.10711.1.S1_x_at3/114+29714175..29718815retrotransposon protein, putative, unclassified
LOC_Os04g50176Os.54415.1.S1_at11/114+29719823..29720862expressed protein
LOC_Os04g50180OsAffx.14355.1.S1_at11/114+29722165..29722883hypothetical protein
LOC_Os04g50180OsAffx.11861.1.S1_x_at1/114+29722165..29722883hypothetical protein
LOC_Os04g50184OsAffx.26547.1.S1_at11/114+29725003..29725404hypothetical protein
LOC_Os04g50188OsAffx.26548.1.S1_at11/114+29726865..29727200hypothetical protein
LOC_Os04g50192OsAffx.25036.1.S1_at11/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50192OsAffx.25036.2.S1_at4/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50196OsAffx.26549.1.S1_at11/114+29734667..29734984hypothetical protein
LOC_Os04g50200OsAffx.26550.1.S1_at11/114+29739017..29740549F-box protein interaction domain containing protein
LOC_Os04g50204Os.6872.2.S1_at11/114+29745888..29749073protein transport protein, putative, expressed
LOC_Os04g50208Os.26838.1.S1_at11/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50208OsAffx.26551.1.S1_at2/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005509molecular_functioncalcium ion binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26548.1.S1_at--369--7771Chr04:29727117..29727141 (25 bp)
GGTGACGTGCGAGCAACAAAATCCT
LOC_Os04g50188
OsAffx.26548.1.S1_at--78--2471Chr04:29727103..29727127 (25 bp)
AACAAAATCCTAGCCAATGGCGGCA
LOC_Os04g50188
OsAffx.26548.1.S1_at--224--876Chr07:28364878..28364897 (20 bp)
ATGGCGGCAAACTTCAACGGTGCTA
LOC_Os07g47440
OsAffx.26548.1.S1_at--577--36510Chr07:28364884..28364908 (25 bp)
CTTCAACGGTGCTAGATTGGTGGGA
LOC_Os07g47440
OsAffx.26548.1.S1_at--171--7655Chr07:28364905..28364929 (25 bp)
GGGAGGCTACCGCAAACATACAAGA
LOC_Os07g47440
OsAffx.26548.1.S1_at--752--5673Chr04:29727030..29727054 (25 bp)
GACATCTAAGAAGGCACTCCGCACT
LOC_Os04g50188
OsAffx.26548.1.S1_at--835--935Chr07:28364941..28364965 (25 bp)
AGGCACTCCGCACTTTGATGTTGTT
LOC_Os07g47440
OsAffx.26548.1.S1_at--974--2038Chr06:4335657..4335680 (24 bp)
ACTTTGATGTTGTTGGTCGCCTGGG
LOC_Os06g08700
OsAffx.26548.1.S1_at--399--5258Chr07:28364993..28365017 (25 bp)
GAATCGCAGAACCTTCCAACAGAAG
LOC_Os07g47440
OsAffx.26548.1.S1_at--379--5311Chr04:29726946..29726970 (25 bp)
GAAGGAGCTTTCAGCTATCTCTCTT
LOC_Os04g50188
OsAffx.26548.1.S1_at--1046--24110Chr07:28365063..28365087 (25 bp)
AAAACTTGGGCCTTAGCAGGAGCGA
LOC_Os07g47440
Target Sequence 
GGTGACGTGCGAGCAACAAAATCCTAGCCAATGGCGGCAAACTTCAACGGTGCTAGATTGGTGGGAGGCTACCGCAAACA
TACAAGAGACATCTAAGAAGGCACTCCGCACTTTGATGTTGTTGGTCGCCTGGGAGATATGGAGCGAAAGGAATCGCAGA
ACCTTCCAACAGAAGGAGCTTTCAGCTATCTCTCTTTTAGCCAAGATCAAGGAAGAGGCCAAAACTTGGGCCTTAGCAGG
AGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis