Browse Element(s) Details


OsAffx.25036.1.S1_at

Description tigr:9632.m04881
TID=OsAffx.25036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EndonucleaseExonucleasephosphatase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5019211/11retrotransposon protein, putative, LINE subclass
LOC_Os04g068706/11retrotransposon protein, putative, unclassified
LOC_Os07g474406/11retrotransposon protein, putative, unclassified
LOC_Os03g102805/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50164NANA4+29708228..29709802retrotransposon protein, putative, unclassified
LOC_Os04g50168NANA4+29711954..29713625retrotransposon protein, putative, unclassified
LOC_Os04g50172Os.27544.1.A1_at4/114+29714175..29718815retrotransposon protein, putative, unclassified
LOC_Os04g50172OsAffx.10711.1.S1_x_at3/114+29714175..29718815retrotransposon protein, putative, unclassified
LOC_Os04g50176Os.54415.1.S1_at11/114+29719823..29720862expressed protein
LOC_Os04g50180OsAffx.14355.1.S1_at11/114+29722165..29722883hypothetical protein
LOC_Os04g50180OsAffx.11861.1.S1_x_at1/114+29722165..29722883hypothetical protein
LOC_Os04g50184OsAffx.26547.1.S1_at11/114+29725003..29725404hypothetical protein
LOC_Os04g50188OsAffx.26548.1.S1_at11/114+29726865..29727200hypothetical protein
LOC_Os04g50192OsAffx.25036.1.S1_at11/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50192OsAffx.25036.2.S1_at4/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50196OsAffx.26549.1.S1_at11/114+29734667..29734984hypothetical protein
LOC_Os04g50200OsAffx.26550.1.S1_at11/114+29739017..29740549F-box protein interaction domain containing protein
LOC_Os04g50204Os.6872.2.S1_at11/114+29745888..29749073protein transport protein, putative, expressed
LOC_Os04g50208Os.26838.1.S1_at11/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50208OsAffx.26551.1.S1_at2/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50212OsAffx.19217.1.S1_x_at2/114+29754217..29754759hypothetical protein
LOC_Os04g50216Os.10083.1.S1_at11/114+29756150..29758746Gtk16 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25036.1.S1_at--1057--7014Chr07:28363947..28363971 (25 bp)
GTAAAGGCGGTGCTTACCTCACAAC
LOC_Os07g47440
OsAffx.25036.1.S1_at--1040--8711Chr04:29727989..29728013 (25 bp)
TGTCTTCCTACTTACTGGGCTCAAA
LOC_Os04g50192
OsAffx.25036.1.S1_at--1078--2912Chr04:29727958..29727982 (25 bp)
AAGGAGTCCCTCGAGGTCTTAGATA
LOC_Os04g50192
OsAffx.25036.1.S1_at--737--3071Chr04:29727875..29727899 (25 bp)
AATCAATTGGATGCGAACCTGCCTC
LOC_Os04g50192
OsAffx.25036.1.S1_at--386--8435Chr07:28364127..28364151 (25 bp)
GGCCTGGGCATCCTAAATCTTGAGA
LOC_Os07g47440
OsAffx.25036.1.S1_at--621--2351Chr04:29727754..29727778 (25 bp)
AAAGCTTGGGTAGGCTCTGGCACGC
LOC_Os04g50192
OsAffx.25036.1.S1_at--1049--8933Chr07:28364237..28364261 (25 bp)
TGACGACACTGATAAGCTCCTCTTT
LOC_Os07g47440
OsAffx.25036.1.S1_at--761--9792Chr07:28364302..28364326 (25 bp)
TAAGCTTCTGGGAATCGGCCTGGAC
LOC_Os07g47440
OsAffx.25036.1.S1_at--896--55Chr07:28364339..28364362 (24 bp)
ATTGAAGGATGTTGCGCCGCTTGTC
LOC_Os07g47440
OsAffx.25036.1.S1_at--445--2474Chr07:28364385..28364409 (25 bp)
AACAGAACGCTTCAACAGGCTTCGC
LOC_Os07g47440
OsAffx.25036.1.S1_at--268--3216Chr06:4335122..4335146 (25 bp)
CAATGGCTTCTTGACTTGGACCTGC
NONE
Target Sequence 
GTAAAGGCGGTGCTTACCTCACAACCTGTCTTCCTACTTACTGGGCTCAAAGCTTCCAAGGAGTCCCTCGAGGTCTTAGA
TAAACAAAGAAGAAAATTCCTTTGGGCGGGAAGAGAGGCTTTGACAGGGGGGAAATGTAAAATCAATTGGATGCGAACCT
GCCTCCCCACTGCTTCCGGAGGCCTGGGCATCCTAAATCTTGAGAAATTCGCAAGAGCCTTACGGCTGCGTTGGCTTTGG
CACGAGTGGAAATCACCCCGAAAAGCTTGGGTAGGCTCTGGCACGCCATGTGACGACACTGATAAGCTCCTCTTTGCGGC
CGCCACAACCATAACGATTGGAAATGGTGCCAAAATAAGCTTCTGGGAATCGGCCTGGACGCAGGGGAGGAGATTGAAGG
ATGTTGCGCCGCTTGTCTACGCAGCCTCCAAAAAAAAAAGAACAGAACGCTTCAACAGGCTTCGCAAGCGAACCAATGGC
TTCTTGACTTGGACCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis