Browse Element(s) Details


OsAffx.26550.1.S1_at

Description tigr:9632.m04883
TID=OsAffx.26550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5020011/11F-box protein interaction domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50172Os.27544.1.A1_at4/114+29714175..29718815retrotransposon protein, putative, unclassified
LOC_Os04g50172OsAffx.10711.1.S1_x_at3/114+29714175..29718815retrotransposon protein, putative, unclassified
LOC_Os04g50176Os.54415.1.S1_at11/114+29719823..29720862expressed protein
LOC_Os04g50180OsAffx.14355.1.S1_at11/114+29722165..29722883hypothetical protein
LOC_Os04g50180OsAffx.11861.1.S1_x_at1/114+29722165..29722883hypothetical protein
LOC_Os04g50184OsAffx.26547.1.S1_at11/114+29725003..29725404hypothetical protein
LOC_Os04g50188OsAffx.26548.1.S1_at11/114+29726865..29727200hypothetical protein
LOC_Os04g50192OsAffx.25036.1.S1_at11/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50192OsAffx.25036.2.S1_at4/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50196OsAffx.26549.1.S1_at11/114+29734667..29734984hypothetical protein
LOC_Os04g50200OsAffx.26550.1.S1_at11/114+29739017..29740549F-box protein interaction domain containing protein
LOC_Os04g50204Os.6872.2.S1_at11/114+29745888..29749073protein transport protein, putative, expressed
LOC_Os04g50208Os.26838.1.S1_at11/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50208OsAffx.26551.1.S1_at2/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50212OsAffx.19217.1.S1_x_at2/114+29754217..29754759hypothetical protein
LOC_Os04g50216Os.10083.1.S1_at11/114+29756150..29758746Gtk16 protein, putative, expressed
LOC_Os04g50660Os.27704.1.A1_at11/114+29762517..29769070U3 small nucleolar RNA-associated protein 13, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26550.1.S1_at--853--4411Chr04:29739592..29739616 (25 bp)
GCCAGCTCGAAGCTCATGGAGATGT
LOC_Os04g50200
OsAffx.26550.1.S1_at--650--5791Chr04:29739548..29739572 (25 bp)
GACGAAGGACGGGACGCACACCTTC
LOC_Os04g50200
OsAffx.26550.1.S1_at--113--2511Chr04:29739457..29739481 (25 bp)
AACATCTACTACAGGTCGATCACCG
LOC_Os04g50200
OsAffx.26550.1.S1_at--200--6991Chr04:29739383..29739407 (25 bp)
GTACCTGTACGACATCACAGACGAG
LOC_Os04g50200
OsAffx.26550.1.S1_at--438--3952Chr04:19791271..19791301 (24 bp)
CGGAGATGCCGATCGACGTGAAGCC
NONE
OsAffx.26550.1.S1_at--636--6171Chr04:29739319..29739343 (25 bp)
GAGGAGGCAGCCTACACGCTGTGCT
LOC_Os04g50200
OsAffx.26550.1.S1_at--47--4611Chr04:29739136..29739160 (25 bp)
GCGACGTTGGACGTGACGTGTTTCA
LOC_Os04g50200
OsAffx.26550.1.S1_at--155--6831Chr04:29739117..29739141 (25 bp)
GTTTCATGGAGATGCTGGTCCGCAT
LOC_Os04g50200
OsAffx.26550.1.S1_at--776--4691Chr04:29739075..29739099 (25 bp)
GCGGCATGCAGGACGTGATCGACAT
LOC_Os04g50200
OsAffx.26550.1.S1_at--1162--1891Chr04:29739063..29739087 (25 bp)
ACGTGATCGACATGCCGTTGCTGAA
LOC_Os04g50200
OsAffx.26550.1.S1_at--541--6671Chr04:29739047..29739071 (25 bp)
GTTGCTGAACGCCTCTCTGAACGTT
LOC_Os04g50200
Target Sequence 
GCCAGCTCGAAGCTCATGGAGATGTCCGGCCGCGTGTGCGTCGTGACGAAGGACGGGACGCACACCTTCTCCGTGTGGCT
GCTCGTGGCGGAGGACGATCACCGGTGGCAGCGGAGGTGCGCGATCGGGGAGAGCAACATCTACTACAGGTCGATCACCG
CCGCCTGGGACCACGGCGATGCGCTGCTCCTGCTGGTCGACGGCTCGCCGTACCTGTACGACATCACAGACGAGAGGATG
ACGAAGACGGAGATGCCGATCGACGTGAAGCCGGAGGAGGCAGCCTACACGCTGTGCTGGGGTTACAAGCCGACGCTCGT
GTCGCCGGGGAGCATCGTCGGCGACGGCGACGGCGACGAAGAGGAGGGGCGGAGGCGCCGCGGCCGGGATCGGACGGCGG
ACATAGTTGCCGCCGTGAGGCCCGTCCGCGAGCGCGACGTCCGGAGAGGGAGGAAGGCGACGTTGGACGTGACGTGTTTC
ATGGAGATGCTGGTCCGCATCATGCGGGAGCTGCCTGGCGGCATGCAGGACGTGATCGACATGCCGTTGCTGAACGCCTC
TCTGAACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis