Browse Element(s) Details


Os.6872.2.S1_at

Description gb:AK059702.1
DB_XREF= gi:32969720
TID=Os.6872.2
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D01, full insert sequence.
FL= gb:AK073937.1 gb:AK059702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5020411/11protein transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50180OsAffx.14355.1.S1_at11/114+29722165..29722883hypothetical protein
LOC_Os04g50180OsAffx.11861.1.S1_x_at1/114+29722165..29722883hypothetical protein
LOC_Os04g50184OsAffx.26547.1.S1_at11/114+29725003..29725404hypothetical protein
LOC_Os04g50188OsAffx.26548.1.S1_at11/114+29726865..29727200hypothetical protein
LOC_Os04g50192OsAffx.25036.1.S1_at11/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50192OsAffx.25036.2.S1_at4/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50196OsAffx.26549.1.S1_at11/114+29734667..29734984hypothetical protein
LOC_Os04g50200OsAffx.26550.1.S1_at11/114+29739017..29740549F-box protein interaction domain containing protein
LOC_Os04g50204Os.6872.2.S1_at11/114+29745888..29749073protein transport protein, putative, expressed
LOC_Os04g50208Os.26838.1.S1_at11/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50208OsAffx.26551.1.S1_at2/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50212OsAffx.19217.1.S1_x_at2/114+29754217..29754759hypothetical protein
LOC_Os04g50216Os.10083.1.S1_at11/114+29756150..29758746Gtk16 protein, putative, expressed
LOC_Os04g50660Os.27704.1.A1_at11/114+29762517..29769070U3 small nucleolar RNA-associated protein 13, putative, expressed
LOC_Os04g50670OsAffx.26553.2.S1_at11/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_x_at7/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_at6/114+29770077..29771979hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6872.2.S1_at--764--2651Chr04:29748585..29748609 (25 bp)
AAGTTGATTTAGAGTCCAACACGGG
LOC_Os04g50204
Os.6872.2.S1_at--758--2751Chr04:29748710..29748734 (25 bp)
AAGAAATTTGGTGGTCTGCTGAAGA
LOC_Os04g50204
Os.6872.2.S1_at--710--2331Chr04:29748738..29748762 (25 bp)
AAACCCAACCTTAGCATAAATTCTG
LOC_Os04g50204
Os.6872.2.S1_at--91--8791Chr04:29748775..29748799 (25 bp)
TGTTTTGTGCTATATGGCATCTCTT
LOC_Os04g50204
Os.6872.2.S1_at--19--8291Chr04:29748790..29748814 (25 bp)
GGCATCTCTTTCTTTGACTGGTCAT
LOC_Os04g50204
Os.6872.2.S1_at--1150--8931Chr04:29748804..29748828 (25 bp)
TGACTGGTCATCTAGCTTCTGGGTA
LOC_Os04g50204
Os.6872.2.S1_at--613--10011Chr04:29748816..29748840 (25 bp)
TAGCTTCTGGGTATTGCCTCATCAT
LOC_Os04g50204
Os.6872.2.S1_at--344--7691Chr04:29748824..29748848 (25 bp)
GGGTATTGCCTCATCATGGTAAAAA
LOC_Os04g50204
Os.6872.2.S1_at--617--7791Chr04:29748880..29748904 (25 bp)
GGTCGATTGTATTTACAACCGTTTG
LOC_Os04g50204
Os.6872.2.S1_at--512--91Chr04:29748908..29748932 (25 bp)
ATTCCTTGTGCATGTTTGATCGTCA
LOC_Os04g50204
Os.6872.2.S1_at--824--251Chr04:29748973..29748997 (25 bp)
ATATGCCTTGATAATGTTGCTGTAA
LOC_Os04g50204
Target Sequence 
AAGTTGATTTAGAGTCCAACACGGGAGATTCCATTGTTGATGGCAATGGTTTGCANTCCACGACGGCGAGCAATGGCAAC
GCATCACCGCCCAAGCAGCAGCCNCAAAAGAAGAAGCCCTTGCTGAAGAAATTTGGTGGTCTGCTGAAGAAGAAAACCCA
ACCTTAGCATAAATTCTGATGACATTTCTTTGTTTTGTGCTATATGGCATCTCTTTCTTTGACTGGTCATCTAGCTTCTG
GGTATTGCCTCATCATGGTAAAAAAAAATGTTGGGTGTTTTAAGAGAATNCAAATGGTCGATTGTATTTACAACCGTTTG
TTTATTCCTTGTGCATGTTTGATCGTCATTCATATTCTAGTTATTGTATTTATTGTTATTGATGTATAATATGCCTTGAT
AATGTTGCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6872.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis