Browse Element(s) Details


Os.10083.1.S1_at

Description gb:AK071102.1
DB_XREF= gi:32981125
TID=Os.10083.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077L10, full insert sequence.
FL= gb:AK071102.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5021611/11Gtk16 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50192OsAffx.25036.1.S1_at11/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50192OsAffx.25036.2.S1_at4/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50196OsAffx.26549.1.S1_at11/114+29734667..29734984hypothetical protein
LOC_Os04g50200OsAffx.26550.1.S1_at11/114+29739017..29740549F-box protein interaction domain containing protein
LOC_Os04g50204Os.6872.2.S1_at11/114+29745888..29749073protein transport protein, putative, expressed
LOC_Os04g50208Os.26838.1.S1_at11/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50208OsAffx.26551.1.S1_at2/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50212OsAffx.19217.1.S1_x_at2/114+29754217..29754759hypothetical protein
LOC_Os04g50216Os.10083.1.S1_at11/114+29756150..29758746Gtk16 protein, putative, expressed
LOC_Os04g50660Os.27704.1.A1_at11/114+29762517..29769070U3 small nucleolar RNA-associated protein 13, putative, expressed
LOC_Os04g50670OsAffx.26553.2.S1_at11/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_x_at7/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_at6/114+29770077..29771979hypothetical protein
LOC_Os04g50680OsAffx.26554.1.S1_at11/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50680Os.57514.1.S1_x_at1/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50690OsAffx.14357.1.S1_at10/114+29778938..29779670hypothetical protein
LOC_Os04g50700NANA4+29782407..29783358Pathogenesis-related protein Bet v I family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10083.1.S1_at--1033--1811Chr04:29756638..29756662 (25 bp)
ACCCAATCGATAGCGCTGCTGTTCT
LOC_Os04g50216
Os.10083.1.S1_at--670--3831Chr04:29756623..29756647 (25 bp)
CTGCTGTTCTTGATCGGGATTGTTT
LOC_Os04g50216
Os.10083.1.S1_at--1145--7651Chr04:29756608..29756632 (25 bp)
GGGATTGTTTCGGTCACACCAACAT
LOC_Os04g50216
Os.10083.1.S1_at--39--611Chr04:29756504..29756528 (25 bp)
ATGCCCTCACCTGTACATATGAAGC
LOC_Os04g50216
Os.10083.1.S1_at--184--5411Chr04:29756484..29756508 (25 bp)
GAAGCTCCAGCATGCAGGGTTGCTT
LOC_Os04g50216
Os.10083.1.S1_at--921--2931Chr04:29756439..29756463 (25 bp)
AAGGCCTGACAACACCATGGTTTGC
LOC_Os04g50216
Os.10083.1.S1_at--908--4911Chr04:29756343..29756367 (25 bp)
GCTTGGGTTGCCATCGAAACATTTA
LOC_Os04g50216
Os.10083.1.S1_at--930--5311Chr04:29756312..29756336 (25 bp)
GAAGTGTTTAGCCACCCAAATTATG
LOC_Os04g50216
Os.10083.1.S1_at--840--7651Chr04:29756280..29756304 (25 bp)
GGGAGGCACAATGCCCATCAGGCAA
LOC_Os04g50216
Os.10083.1.S1_at--753--9151Chr04:29756269..29756293 (25 bp)
TGCCCATCAGGCAAAGCTGCTTTGA
LOC_Os04g50216
Os.10083.1.S1_at--218--3871Chr04:29756197..29756221 (25 bp)
CTGATCTGATCCCTGTATATATTGA
LOC_Os04g50216
Target Sequence 
ACCCAATCGATAGCGCTGCTGTTCTTGATCGGGATTGTTTCGGTCACACCAACATTGTTGGGCAAGGACGAAGCGCAAGA
AAAAACAACGGAAATTGCAGTTACCGNGTCATGATCACCGAAGCGCCGATCCGCATGCCCTCACCTGTACATATGAAGCT
CCAGCATGCAGGGTTGCTTCAGAAGTAGTAGGAGCATCAAAGGCCTGACAACACCATGGTTTGCAAAGACTACACAGCAT
GACAGGACCTCCAACCCCAAGTGCTTCCCTGACCCCTCTCCATTACTGGAAGCCTGCTTGGGTTGCCATCGAAACATTTA
CGAAGTGAAGTGTTTAGCCACCCAAATTATGGAGTCTGGGGAGGCACAATGCCCATCAGGCAAAGCTGCTTTGATGTGTA
AGCATTAAGCCAAGTAGTGTTGTTTAGATGGGACAAGCAAACTGATCTGATCCCTGTATATATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis