Browse Element(s) Details


Os.27704.1.A1_at

Description gb:AK101611.1
DB_XREF= gi:32986820
TID=Os.27704.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052D05, full insert sequence.
FL= gb:AK101611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5066011/11U3 small nucleolar RNA-associated protein 13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50200OsAffx.26550.1.S1_at11/114+29739017..29740549F-box protein interaction domain containing protein
LOC_Os04g50204Os.6872.2.S1_at11/114+29745888..29749073protein transport protein, putative, expressed
LOC_Os04g50208Os.26838.1.S1_at11/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50208OsAffx.26551.1.S1_at2/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50212OsAffx.19217.1.S1_x_at2/114+29754217..29754759hypothetical protein
LOC_Os04g50216Os.10083.1.S1_at11/114+29756150..29758746Gtk16 protein, putative, expressed
LOC_Os04g50660Os.27704.1.A1_at11/114+29762517..29769070U3 small nucleolar RNA-associated protein 13, putative, expressed
LOC_Os04g50670OsAffx.26553.2.S1_at11/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_x_at7/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_at6/114+29770077..29771979hypothetical protein
LOC_Os04g50680OsAffx.26554.1.S1_at11/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50680Os.57514.1.S1_x_at1/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50690OsAffx.14357.1.S1_at10/114+29778938..29779670hypothetical protein
LOC_Os04g50700NANA4+29782407..29783358Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g50710OsAffx.4138.1.S1_at11/114+29785219..29786034Pathogenesis-related protein Bet v I family protein
LOC_Os04g50720Os.50804.1.S1_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_s_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_at9/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50730Os.20398.1.S1_at11/114+29793068..29797326RWD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27704.1.A1_at--793--6791Chr04:29762873..29762897 (25 bp)
GTTATTCGCACCACCAATTTTGTAG
LOC_Os04g50660
Os.27704.1.A1_at--435--6971Chr04:29762852..29762876 (25 bp)
GTAGCTGCTGTTTTATCTGGTATGT
LOC_Os04g50660
Os.27704.1.A1_at--170--2091Chr04:29762814..29762838 (25 bp)
ACATGTTTTACCTTTTGACCCACTG
LOC_Os04g50660
Os.27704.1.A1_at--685--7711Chr04:29762753..29762777 (25 bp)
GGTGGCTTTCAGTTCTAAATTTCTA
LOC_Os04g50660
Os.27704.1.A1_at--353--7311Chr04:29762727..29762751 (25 bp)
GTGCTTCAGAAAGTTTTACCGTCCT
LOC_Os04g50660
Os.27704.1.A1_at--222--9971Chr04:29762711..29762735 (25 bp)
TACCGTCCTTGATAGTTGTTGCCAT
LOC_Os04g50660
Os.27704.1.A1_at--511--8811Chr04:29762695..29762719 (25 bp)
TGTTGCCATCTTCTGCGTTGGGTAC
LOC_Os04g50660
Os.27704.1.A1_at--958--7811Chr04:29762675..29762699 (25 bp)
GGTACTTGGGTTAGTTTGCCTTGAT
LOC_Os04g50660
Os.27704.1.A1_at--250--8191Chr04:29762619..29762643 (25 bp)
GGAAGCGGTACCCAGCAGCAAATAA
LOC_Os04g50660
Os.27704.1.A1_at--843--10711Chr04:29762592..29762616 (25 bp)
TTGCTTGCTCCACTTGTAATTGTTG
LOC_Os04g50660
Os.27704.1.A1_at--1076--8551Chr04:29762556..29762580 (25 bp)
TGGATGTCGGCTCTCTTCATAATTC
LOC_Os04g50660
Target Sequence 
GTTATTCGCACCACCAATTTTGTAGCTGCTGTTTTATCTGGTATGTTGCAGCATGAATCACATGTTTTACCTTTTGACCC
ACTGTACAGAATGCATTCTTTGNTNNAGNNAGAAAGATCTGGTGGCTTTCAGTTCTAAATTTCTAAGTGCTTCAGAAAGT
TTTACCGTCCTTGATAGTTGTTGCCATCTTCTGCGTTGGGTACTTGGGTTAGTTTGCCTTGATTAATTTCCATGTGTGTG
TATGGCAGTGGCACGGAAGCGGTACCCAGCAGCAAATAAAGTTGCTTGCTCCACTTGTAATTGTTGGATCTGCGATCTGG
ATGTCGGCTCTCTTCATAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27704.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis