Browse Element(s) Details


OsAffx.4138.1.S1_at

Description tigr:9632.m04893
TID=OsAffx.4138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=major pollen allergen cor a 1 isoforms 5, 6, 11 and 16 (cor a i). (european hazel, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5071011/11Pathogenesis-related protein Bet v I family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50660Os.27704.1.A1_at11/114+29762517..29769070U3 small nucleolar RNA-associated protein 13, putative, expressed
LOC_Os04g50670OsAffx.26553.2.S1_at11/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_x_at7/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_at6/114+29770077..29771979hypothetical protein
LOC_Os04g50680OsAffx.26554.1.S1_at11/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50680Os.57514.1.S1_x_at1/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50690OsAffx.14357.1.S1_at10/114+29778938..29779670hypothetical protein
LOC_Os04g50700NANA4+29782407..29783358Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g50710OsAffx.4138.1.S1_at11/114+29785219..29786034Pathogenesis-related protein Bet v I family protein
LOC_Os04g50720Os.50804.1.S1_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_s_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_at9/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50730Os.20398.1.S1_at11/114+29793068..29797326RWD domain containing protein, expressed
LOC_Os04g50740Os.54242.1.S1_at11/114+29797832..29801986Zinc finger found in FPG and IleRS family protein, expressed
LOC_Os04g50750OsAffx.4140.1.S1_at11/114+29802084..29802621hypothetical protein
LOC_Os04g50760Os.51663.1.S1_at10/114+29803678..29807080IBR domain containing protein, expressed
LOC_Os04g50770Os.49848.1.S1_at11/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50770OsAffx.7575.1.S1_x_at1/114+29809755..29811600Myb-related protein Zm1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4138.1.S1_at--192--10111Chr04:29785282..29785306 (25 bp)
TATGGCGGCTTCCTTGTTGCGCAGC
LOC_Os04g50710
OsAffx.4138.1.S1_at--1125--1611Chr04:29785316..29785340 (25 bp)
AGCTGGTTCCTGAAGTATTTTCCAA
LOC_Os04g50710
OsAffx.4138.1.S1_at--449--6871Chr04:29785330..29785354 (25 bp)
GTATTTTCCAAGGTTGAGCTCGTTG
LOC_Os04g50710
OsAffx.4138.1.S1_at--1091--10831Chr04:29785370..29785394 (25 bp)
TTGGGTCTGTCCTGCATGTCGTCTT
LOC_Os04g50710
OsAffx.4138.1.S1_at--746--7732Chr04:29785786..29785810 (25 bp)
GGTGGTTTTCTAGATCAAGGCTTTA
LOC_Os04g50710
OsAffx.4138.1.S1_at--179--2391Chr04:29785851..29785875 (25 bp)
AAACTCTTCTGTACTACGATCGACC
LOC_Os04g50710
OsAffx.4138.1.S1_at--2--8111Chr04:29785893..29785917 (25 bp)
GGACGCAAGCAAGGCATCCTCTGTC
LOC_Os04g50710
OsAffx.4138.1.S1_at--400--571Chr04:29785908..29785932 (25 bp)
ATCCTCTGTCAGCACCGGTGGTTTA
LOC_Os04g50710
OsAffx.4138.1.S1_at--550--5091Chr04:29785919..29785943 (25 bp)
GCACCGGTGGTTTAGCTGCTACTGC
LOC_Os04g50710
OsAffx.4138.1.S1_at--10--1991Chr04:29785939..29785963 (25 bp)
ACTGCTGAGGCCGTCACGAAGTATA
LOC_Os04g50710
OsAffx.4138.1.S1_at--609--5931Chr04:29785977..29786001 (25 bp)
GAGCAGCGCCGAGCCTGAACAGGTT
LOC_Os04g50710
Target Sequence 
TATGGCGGCTTCCTTGTTGCGCAGCTGCTCCCTCAGCTGGTTCCTGAAGTATTTTCCAAGGTTGAGCTCGTTGAGGGAGA
CGGTGGCGTTGGGTCTGTCCTGCATGTCGTCTTCGCTCCTGGGGCACATACGGGAGAATTCATGAAAGAAAAGTTCATCA
AGATTGACAATGAGAACTACATCAAGGAGGCAGAAGTAATAGAAGGTGGTTTTCTAGATCAAGGCTTTAAGAAATATGTC
GTGCGAATAGAGATCATCGGAAAAACAGAAAACTCTTCTGTACTACGATCGACCATTAAATTCGAAGCTGAGGACGCAAG
CAAGGCATCCTCTGTCAGCACCGGTGGTTTAGCTGCTACTGCTGAGGCCGTCACGAAGTATATGAGGGAACAGAGGAGCA
GCGCCGAGCCTGAACAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis