Browse Element(s) Details


Os.49848.1.S1_at

Description gb:AK111960.1
DB_XREF= gi:37988623
TID=Os.49848.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49848 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D02, full insert sequence.
FL= gb:AK111960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5077011/11Myb-related protein Zm1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50710OsAffx.4138.1.S1_at11/114+29785219..29786034Pathogenesis-related protein Bet v I family protein
LOC_Os04g50720Os.50804.1.S1_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_s_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_at9/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50730Os.20398.1.S1_at11/114+29793068..29797326RWD domain containing protein, expressed
LOC_Os04g50740Os.54242.1.S1_at11/114+29797832..29801986Zinc finger found in FPG and IleRS family protein, expressed
LOC_Os04g50750OsAffx.4140.1.S1_at11/114+29802084..29802621hypothetical protein
LOC_Os04g50760Os.51663.1.S1_at10/114+29803678..29807080IBR domain containing protein, expressed
LOC_Os04g50770Os.49848.1.S1_at11/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50770OsAffx.7575.1.S1_x_at1/114+29809755..29811600Myb-related protein Zm1, putative, expressed
LOC_Os04g50780OsAffx.14358.1.S1_at11/114+29825728..29826123hypothetical protein
LOC_Os04g50790Os.10591.1.S1_at10/114+29827782..29831516Aldose reductase-related protein, putative, expressed
LOC_Os04g50800Os.54621.1.S1_at9/114+29833563..29835415expressed protein
LOC_Os04g50800Os.11943.2.S1_at1/114+29833563..29835415expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49848.1.S1_at--87--8651Chr04:29810238..29810262 (25 bp)
TGTGGAGGACCCAGTGTCGTGCTAC
LOC_Os04g50770
Os.49848.1.S1_at--281--1111Chr04:29810226..29810250 (25 bp)
AGTGTCGTGCTACTTCCAAGCGGGC
LOC_Os04g50770
Os.49848.1.S1_at--162--8731Chr04:29810160..29810184 (25 bp)
TGTCATCACGAGTAACCCCATGGAT
LOC_Os04g50770
Os.49848.1.S1_at--518--9791Chr04:29810148..29810172 (25 bp)
TAACCCCATGGATTACTACGTGTAA
LOC_Os04g50770
Os.49848.1.S1_at--340--9791Chr04:29810126..29810150 (25 bp)
TAAGCTCGTCGTTAATTACCCATTT
LOC_Os04g50770
Os.49848.1.S1_at--401--6511Chr04:29810084..29810108 (25 bp)
GATATACGATTACCCAACTCGACCG
LOC_Os04g50770
Os.49848.1.S1_at--566--5811Chr04:29810064..29810088 (25 bp)
GACCGAATCGTCCAGTGATGCTACA
LOC_Os04g50770
Os.49848.1.S1_at--738--1791Chr04:29810022..29810046 (25 bp)
ACGCGTATAATTGTACGACCGTATA
LOC_Os04g50770
Os.49848.1.S1_at--13--5751Chr04:29809969..29809993 (25 bp)
GACGGCATCGATGGGAACAACACAT
LOC_Os04g50770
Os.49848.1.S1_at--819--2811Chr04:29809806..29809830 (25 bp)
AAGATTGCCGGTACGAGTTAACCAG
LOC_Os04g50770
Os.49848.1.S1_at--974--7011Chr04:29809768..29809792 (25 bp)
GTACTTTTAACATCAGTTTCCAGCA
LOC_Os04g50770
Target Sequence 
TGTGGAGGACCCAGTGTCGTGCTACTTCCAAGCGGGCCCCACGGCAGCCGCCACGTGGCAGGGACACGAGCCCTCGGCTG
TCATCACGAGTAACCCCATGGATTACTACGTGTAAGCTCGTCGTTAATTACCCATTTTTATCTCTAGATTAGGAGATATA
CGATTACCCAACTCGACCGAATCGTCCAGTGATGCTACATACTTCTAGTACAATACACGCGTATAATTGTACGACCGTAT
AAAGGAGTACTATACCAATCCAATACGAAGACGGCATCGATGGGAACAACACATGCAAAGATGCATATATGCTTTTGGGC
AGTAAAAAAGGTGATAGTTAGGCTAGGATGCACAAAAAAGGTGTTAATTTTTTTTTTTGGGATGTCTATATATGTTGGGC
AGATTAAGTGGTGCATGCAATCACAAATGAGTCAAGATTGCCGGTACGAGTTAACCAGAGATGTAACTTATGTACTTTTA
ACATCAGTTTCCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis