Browse Element(s) Details


OsAffx.7575.1.S1_x_at

Description tigr:9638.m03195
TID=OsAffx.7575.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative DNA excision repair cross-complementing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g162202/11hypothetical protein
LOC_Os02g415101/11Myb-related protein Myb4, putative, expressed
LOC_Os04g507701/11Myb-related protein Zm1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16160NANA2+9191843..9192277hypothetical protein
LOC_Os02g16170Os.47999.3.S1_x_at1/112+9192966..9196433retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16180Os.45173.5.S1_x_at4/112+9198806..9199597retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16190NANA2+9199867..9204279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16200NANA2+9207188..9210329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16210OsAffx.29742.3.S1_x_at11/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.29742.1.S1_x_at6/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.29742.2.S1_x_at5/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.22896.1.S1_x_at1/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210Os.47114.1.S1_x_at1/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16220OsAffx.29675.1.S1_x_at11/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.4.S1_x_at6/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.2.S1_x_at4/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.3.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220Os.45229.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16230NANA2+9223456..9223827hypothetical protein
LOC_Os02g16240OsAffx.24649.3.S1_at10/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16240OsAffx.24649.1.S1_at5/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16250OsAffx.2640.1.S1_at11/112+9238437..9239234NBS-LRR disease resistance protein, putative
LOC_Os02g16260OsAffx.24277.1.S1_at9/112+9240038..9243851Xa1, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7575.1.S1_x_at--688--4353Chr12:7303857..7303881 (25 bp)
CCAGACGAGGAGTACGAGCACGGCT
NONE
OsAffx.7575.1.S1_x_at--650--6992Chr12:7303868..7303892 (25 bp)
GTACGAGCACGGCTGGGCGATGGCG
NONE
OsAffx.7575.1.S1_x_at--203--10836Chr12:7303917..7303941 (25 bp)
TTGGGCCGGCCTTGGCCCAGACTCA
NONE
OsAffx.7575.1.S1_x_at--29--4351Chr10:18899106..18899248 (25 bp)
CCAGACTCATGACGCGGCCAGCAAG
NONE
OsAffx.7575.1.S1_x_at--100--9631NONE
TCATGACGCGGCCAGCAAGGTTGAC
NONE
OsAffx.7575.1.S1_x_at--962--1831Chr10:18899117..18899259 (25 bp)
ACGCGGCCAGCAAGGTTGACTGGTT
NONE
OsAffx.7575.1.S1_x_at--218--4491Chr10:18899305..18899329 (25 bp)
GCCGGAGCAGGCCAGTGGAGCTAAG
NONE
OsAffx.7575.1.S1_x_at--564--4232Chr10:18899460..18899484 (25 bp)
CCGAGAGGACGCCAACGGCGAGGTG
NONE
OsAffx.7575.1.S1_x_at--529--5074Chr10:18899491..18899515 (25 bp)
GCACCTCAAGAAGCGGGTGTCGCCG
NONE
OsAffx.7575.1.S1_x_at--929--5351Chr10:18899548..18899572 (25 bp)
GAAGATGACCTGGACCGACGTGCTC
NONE
OsAffx.7575.1.S1_x_at--843--4591Chr10:18899635..18899659 (25 bp)
GCGACTCGGCCGATGCGCAGAGCAA
NONE
Target Sequence 
CCAGACGAGGAGTACGAGCACGGCTGGGCGATGGCGGCGGCCAAACGGGGACGGGGCTTGTTGGGCCGGCCTTGGCCCAG
ACTCATGACGCGGCCAGCAAGGTTGACTGGTTGAGCGGGGTGGAGGCGACAGGCGGGGCGGAGCTGGACGGGCGGTGGCC
GGAGCAGGCCAGTGGAGCTAAGCGGCGGTGGCCGGAGCAGGGGCAAGGGGCCACGGCACCGCGATGCCGAGGGGTGACTG
GCGGAGAGAGGGGCGGCGGGTGGAGCAGTGGAGAGTGGCGGCGAGCTCCTGGGAGATGGCGACGGGATGAGGCCGAGAGG
ACGCCAACGGCGAGGTGGAGCACGCACCTCAAGAAGCGGGTGTCGCCGGAGCAGAAGAAGGGTGGGGGCAAGAGCAAGAA
GAAGATGACCTGGACCGACGTGCTCGTCCCGTCCCCCTCGCCATCGTCATCCTCCACCGCGACGACCAACTGCTCCAGGC
TCCAGCGGCGACTCGGCCGATGCGCAGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7575.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis